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  1. 2141
    “…METHODS: SCelVis is implemented in Python using Dash by Plotly. It is available as a standalone application as a Python package, via Conda/Bioconda and as a Docker image. …”
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    SCelVis: exploratory single cell data analysis on the desktop and in the cloud
  2. 2142
    por Massaad, Elie, Cherfan, Patrick
    Publicado 2020
    “…All analyses were carried on the Google Cloud computing service “Google Colab” using Python libraries (Python Software Foundation). Results: A total of 41,329 tweets containing the term “telehealth” were retrieved. …”
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    Social Media Data Analytics on Telehealth During the COVID-19 Pandemic
  3. 2143
    “…RESULTS: We developed the Python-based workflow “Fcirc” to identify fusion linear and f-circRNAs from RNA-Seq data with high specificity. …”
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    Fcirc: A comprehensive pipeline for the exploration of fusion linear and circular RNAs
  4. 2144
    “…. • Computations for CoD, MI are performed using Python codes developed in-house while a function in NumPy module of Python was used for PCC calculations.…”
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    Weight-of-evidence approach to identify regionally representative sites for air-quality monitoring network: Satellite data-based analysis
  5. 2145
    por Lotz, Samuel D., Dickson, Alex
    Publicado 2020
    “…The wepy toolkit is in pure Python and as such is highly portable and extensible, making it an excellent platform to develop and use new WE resampling algorithms such as WExplore, REVO, and others while leveraging the entire Python ecosystem. …”
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    Wepy: A Flexible Software Framework for Simulating Rare Events with Weighted Ensemble Resampling
  6. 2146
    “…It is programmed in asynchronous style using pyadept, a Python library based on Python coroutines, AsyncIO event loop and ZeroMQ middleware. …”
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    Event-driven industrial robot control architecture for the Adept V+ platform
  7. 2147
    “…The classification was done based on a software package of machine learning in Python. The classification performance was measured by SKLearn program incorporated in the Python software package and compared with the clinical diagnostic results. …”
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    Bone metabolic biomarker-based diagnosis of type 2 diabetes osteoporosis by support vector machine
  8. 2148
    “…We computed a set of metrics for Rust, comparing them with the ones obtained from C and a set of object-oriented languages: C++, Python, JavaScript, TypeScript. To parse the software artifacts and compute the metrics, it was leveraged a tool called rust-code-analysis that was extended with a software module, written in Python, with the aim of uniforming and comparing the results. …”
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    Evaluation of Rust code verbosity, understandability and complexity
  9. 2149
    “…Finally, we released CLEP as an open source Python package together with examples and documentation. …”
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    CLEP: a hybrid data- and knowledge-driven framework for generating patient representations
  10. 2150
    “…We have found AlphaTims to be a key enabling tool to explore high-dimensional LC-TIMS-Q-TOF data and have made it freely available as an open-source Python package with a stand-alone graphical user interface at https://github.com/MannLabs/alphatims or as part of the AlphaPept ‘ecosystem’.…”
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    AlphaTims: Indexing Trapped Ion Mobility Spectrometry–TOF Data for Fast and Easy Accession and Visualization
  11. 2151
    por Flood, Matthew W., Grimm, Bernd
    Publicado 2021
    “…Compatible with Windows, Mac and Linux operating systems, EntropyHub is hosted on GitHub, as well as the native package repository for MATLAB, Python and Julia, respectively. The goal of EntropyHub is to integrate the many established entropy methods into one complete resource, providing tools that make advanced entropic time series analysis straightforward and reproducible.…”
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    EntropyHub: An open-source toolkit for entropic time series analysis
  12. 2152
    “…CONCLUSIONS: Qiber3D is implemented as a Python package, and its source code is freely available at https://github.com/theia-dev/Qiber3D. …”
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    Qiber3D—an open-source software package for the quantitative analysis of networks from 3D image stacks
  13. 2153
    “…ProbeInterface is first of all a Python API, which enables users to create and visualize probes and probe groups at any required complexity level. …”
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    ProbeInterface: A Unified Framework for Probe Handling in Extracellular Electrophysiology
  14. 2154
    por Gong, Yao, Chen, Yue
    Publicado 2022
    “…RESULTS: Here, we developed a UbE3-APA, a computational algorithm and stand-alone python-based software for Ub E3 ligase Activity Profiling Analysis. …”
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    UbE3-APA: a bioinformatic strategy to elucidate ubiquitin E3 ligase activities in quantitative proteomics study
  15. 2155
    “…[Image: see text] In this study, we have developed a comprehensive machine learning (ML) framework for long-term groundwater contamination monitoring as the Python package PyLEnM (Python for Long-term Environmental Monitoring). …”
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    PyLEnM: A Machine Learning Framework for Long-Term Groundwater Contamination Monitoring Strategies
  16. 2156
    “…Specifically, the pipeline including documented code is defined for MNE Python (a Python toolbox) and FieldTrip (a Matlab toolbox), and a data set on visuospatial attention is used to illustrate the steps. …”
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    FLUX: A pipeline for MEG analysis
  17. 2157
    “…To address this challenge, we have developed Exodus—a reference-based Python algorithm for quantification of genomes, including those that are highly similar, when they are sequenced together in a single mix. …”
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    Exodus: sequencing-based pipeline for quantification of pooled variants
  18. 2158
    “…Here, we introduce Seq, the first language tailored specifically to bioinformatics, which marries the ease and productivity of Python with C-like performance. Seq starts with a subset of Python—and is in many cases a drop-in replacement—yet also incorporates novel bioinformatics- and computational genomics-oriented data types, language constructs and optimizations. …”
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    Seq: A High-Performance Language for Bioinformatics
  19. 2159
    “…Results are provided in formats that ease further analyses with spreadsheet programs or with programming languages, such as Python or R. AutoClassWeb is implemented in Python and is published under the 3-Clauses BSD license. …”
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    AutoClassWeb: a simple web interface for Bayesian clustering of omics data
  20. 2160
    “…MovementRx is our inhouse-developed decision-support system that depends on SPM1D Python implementation of the SPM (spm1d.org). We present the potential application of MovementRx in the prediction of increased joint forces with the possibility to predispose to osteoarthritis in a sample of post-surgical Transtibial Amputation (TTA) patients who were ambulant in the community. …”
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    Identification of Secondary Biomechanical Abnormalities in the Lower Limb Joints after Chronic Transtibial Amputation: A Proof-of-Concept Study Using SPM1D Analysis
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