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2521por Ruano, Juan, Gómez-García, Francisco, Gay-Mimbrera, Jesús, Aguilar-Luque, Macarena, Fernández-Rueda, José Luis, Fernández-Chaichio, Jesús, Alcalde-Mellado, Patricia, Carmona-Fernandez, Pedro J., Sanz-Cabanillas, Juan Luis, Viguera-Guerra, Isabel, Franco-García, Francisco, Cárdenas-Aranzana, Manuel, Romero, José Luis Hernández, Gonzalez-Padilla, Marcelino, Isla-Tejera, Beatriz, Garcia-Nieto, Antonio Velez“…We expect to make our results, datasets, and R and Python code scripts publicly available during the third quarter of 2018.…”
Publicado 2018
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2522por McCoy, Matthew D., Shivakumar, Vikram, Nimmagadda, Sridhar, Jafri, Mohsin Saleet, Madhavan, Subha“…Supporting the continued development of these applications, we have developed the SNP2SIM workflow that generates reproducible molecular dynamics and molecular docking simulations for downstream functional variant analysis. The Python workflow utilizes molecular dynamics software (NAMD (Phillips et al., J Comput Chem 26(16):1781-802, 2005), VMD (Humphrey et al., J Mol Graph 14(1):33-8, 27-8, 1996)) to generate variant specific scaffolds for simulated small molecule docking (AutoDock Vina (Trott and Olson, J Comput Chem 31(2):455-61, 2010)). …”
Publicado 2019
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2523“…We used Stata 16 (StataCorp) for quantitative analysis, and Python (Python Software Foundation) to plot a state-level heat map. …”
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2524por Kui, Balázs, Pintér, József, Molontay, Roland, Nagy, Marcell, Farkas, Nelli, Gede, Noémi, Vincze, Áron, Bajor, Judit, Gódi, Szilárd, Czimmer, József, Szabó, Imre, Illés, Anita, Sarlós, Patrícia, Hágendorn, Roland, Pár, Gabriella, Papp, Mária, Vitális, Zsuzsanna, Kovács, György, Fehér, Eszter, Földi, Ildikó, Izbéki, Ferenc, Gajdán, László, Fejes, Roland, Németh, Balázs Csaba, Török, Imola, Farkas, Hunor, Mickevicius, Artautas, Sallinen, Ville, Galeev, Shamil, Ramírez‐Maldonado, Elena, Párniczky, Andrea, Erőss, Bálint, Hegyi, Péter Jenő, Márta, Katalin, Váncsa, Szilárd, Sutton, Robert, Szatmary, Peter, Latawiec, Diane, Halloran, Chris, de‐Madaria, Enrique, Pando, Elizabeth, Alberti, Piero, Gómez‐Jurado, Maria José, Tantau, Alina, Szentesi, Andrea, Hegyi, Péter“…We used the scikit‐learn, xgboost and catboost Python packages for modelling. We evaluated our models using fourfold cross‐validation, and the receiver operating characteristic (ROC) curve, the area under the ROC curve (AUC), and accuracy metrics were calculated on the union of the test sets of the cross‐validation. …”
Publicado 2022
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2525por Yoo, Junsang, Lee, Jeonghoon, Min, Ji Young, Choi, Sae Won, Kwon, Joon-myoung, Cho, Insook, Lim, Chiyeon, Choi, Mi Young, Cha, Won Chul“…METHODS: CDSS reasoning engines, usually represented as R or Python objects, are deployed into the CANE platform and converted into C# objects. …”
Publicado 2022
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2526“…We hypothesize that such mutations are likely to cluster with specific dichotomous shifts in the expression of the genes they most closely control, and propose GMMchi, a Python package that leverages Gaussian Mixture Modeling to detect and characterize bimodal gene expression patterns across cancer samples, as a tool to analyze such correlations using 2 × 2 contingency table statistics. …”
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2527por Gosset, Simon, Glatigny, Annie, Gallopin, Mélina, Yi, Zhou, Salé, Marion, Mucchielli-Giorgi, Marie-Hélène“…Deployment on Windows is possible but it requires the prior installation of Rtools and Python 3. RESULTS: APPINetwork allows the user to build a PPI network from selected public databases and add their own PPI data. …”
Publicado 2022
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2528por Henry, C. Nicholas, Piper, Kathryn, Wilson, Amanda E., Miraszek, John L., Probst, Claire S., Rong, Yuying, Liberles, David A.“…RESULTS: Here a software package written in Python, ‘WGDTree’ for the analysis of duplicate gene retention following whole genome duplication events is presented. …”
Publicado 2022
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2529“…RESULTS: We present robustica, a Python-based package to compute robust independent components with a fully customizable clustering algorithm and distance metric. …”
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2530por Küçükakarsu, Mustafa, Kavsaoğlu, Ahmet Reşit, Alenezi, Fayadh, Alhudhaif, Adi, Alwadie, Raghad, Polat, Kemal“…After the data set was created from the signal data produced by the heard and unheard sounds in the brain, machine learning processes were carried out with the PYTHON programming language. The raw data created with MATLAB was taken with the Python programming language, and after the pre-processing steps were completed, machine learning methods were applied to the classification algorithms. …”
Publicado 2023
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2531por Mondal, Rahul, Do, Minh Dung, Ahmed, Nasim Uddin, Walke, Daniel, Micheel, Daniel, Broneske, David, Saake, Gunter, Heyer, Robert“…Furthermore, our approach was faster than the standard decision tree implementations in R (0.62 s) and equal to Python (0.08 s), also using CSV files as input for small datasets. …”
Publicado 2023
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2532por Liu, Hongbin, Chen, Hucheng, Chen, Kai, Kierstead, James, Lanni, Francesco, Takai, Helio, Jin, Ge“…A software program has been developed with Python, and all the commands are sent to the DAQ board through Gigabit Ethernet by this program. …”
Publicado 2016
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2533por Heo, Seong-Gu“…The event analysis and histogram codes were implemented by C and Python language respectively. The effects of pileup events were well shown in the track multiplicity. …”
Publicado 2011
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2534“…DIRAC is mostly coded in python. DIRAC security infrastructure has been designed to be a completely generic XML-RPC transport over a SSL tunnel. …”
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2535“…The powerful API combined with Python and Java bindings can easily be used to build new services for job control and data transfer. …”
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2536“…The LineBuilder is a Python program aimed at dynamically assembling complex FLUKA models of accelerator beam lines: positions, magnetic fields and scorings are automatically set up, and geometry details such as apertures of collimators, tilting and misalignment of elements, beam pipes and tunnel geometries can be entered at user’s will. …”
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2537por Garonne, V, Graciani Días, R, Saborido Silva, J J, Sánchez García, M, Vizcaya Carrillo, R“…All the system components are implemented as a set of cooperating python classes following the design choice of LHCb. …”
Publicado 2004
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2538por Sánchez-García, M, Garonne, V, Graciani-Díaz, R, Saborido-Silva, J J, Vizcaya-Carrillo, R“…All the system components are implemented as a set of cooperating python classes following the design choice of LHCb. …”
Publicado 2004
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2539“…The data collector is a daemon, implemented in Python, responsible for data gathering from the central monitoring repository and storing into time series data structures. …”
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2540por Igel, Heiner“…The results can be reproduced with the supplementary electronic material provided as Python codes embedded in Jupyter notebooks. The volume starts with a primer on the physics of elastic wave propagation, and a chapter on the fundamentals of parallel programming, computational grids, mesh generation, and hardware models. …”
Publicado 2016
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