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  1. 2581
    “…Summary: Easyfig is a Python application for creating linear comparison figures of multiple genomic loci with an easy-to-use graphical user interface. …”
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    Easyfig: a genome comparison visualizer
  2. 2582
    “…CONCLUSION: AUDocker LE provides a straight forward graphical interface which can be used in a standard personal computer with Microsoft Windows XP or Windows 7 as the operating system where Autodock Vina, Python 2.5 and .net frame work are preinstalled.…”
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    AUDocker LE: A GUI for virtual screening with AUTODOCK Vina
  3. 2583
    por Lesack, Kyle, Naugler, Christopher
    Publicado 2011
    “…In this paper we present an open source program written in Python 3.2 that performs calculations for standard Bonferroni, Bonferroni-Holm and Benjamini-Hochberg corrections.…”
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    An open-source software program for performing Bonferroni and related corrections for multiple comparisons
  4. 2584
    “…Our pipeline is written in Python and is freely available as open-source at www.cmtk.org.…”
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    The Connectome Mapper: An Open-Source Processing Pipeline to Map Connectomes with MRI
  5. 2585
    “…CONCLUSIONS: The software is implemented in Python, is platform independent, and is available at http://www.sysbio.se/Fantom.…”
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    FANTOM: Functional and taxonomic analysis of metagenomes
  6. 2586
    por Kluyver, Thomas A, Osborne, Colin P
    Publicado 2013
    “…It is available both as a graphical user interface (GUI) for simple interactive use, and as a library for more advanced functionality with programs written in Python. Taxonome also includes functions to standardize distribution information to a well-defined set of regions, such as the TDWG World Geographical Scheme for Recording Plant Distributions. …”
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    Taxonome: a software package for linking biological species data
  7. 2587
    “…We describe TmiRUSite and TmiROSite scripts developed using python as tools for the extraction of nucleotide sequences for miRNA binding sites with their encoded amino acid residue sequences. …”
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    TmiRUSite and TmiROSite scripts: searching for mRNA fragments with miRNA binding sites with encoded amino acid residues
  8. 2588
    “…There is a need for a powerful software tool to automatically or semi-automatically assist in identifying and correcting errors. Here, we use Python to develop a web-based software tool (SDMdata) to easily collect occurrence data from the Global Biodiversity Information Facility (GBIF) and check species names and the accuracy of coordinates (latitude and longitude). …”
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    SDMdata: A Web-Based Software Tool for Collecting Species Occurrence Records
  9. 2589
    “…We test its universality in our script programmed in Python. Our data shows that, among the entire human and mouse CDS, at least 70% of long CDS cloning will benefit from this strategy.…”
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    Restriction-based Multiple-fragment Assembly Strategy to Avoid Random Mutation during Long cDNA Cloning
  10. 2590
    “…Summary: We present DisVis, a Python package and command line tool to calculate the reduced accessible interaction space of distance-restrained binary protein complexes, allowing for direct visualization and quantification of the information content of the distance restraints. …”
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    DisVis: quantifying and visualizing accessible interaction space of distance-restrained biomolecular complexes
  11. 2591
    por Gruenstaeudl, Michael
    Publicado 2016
    “…METHODS AND RESULTS: A set of command line–based Python scripts was developed that (a) communicates standardized input to and output from the software applications Mesquite, BayesTraits, and TreeGraph2; (b) automates the process of ancestral character state reconstruction; and (c) facilitates the visualization of reconstruction results. …”
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    WARACS: Wrappers to Automate the Reconstruction of Ancestral Character States(1)
  12. 2592
    “…Bindings for Perl, C and Python programming environments are available. Based on COD::CIF::Parser, the cod-tools package for manipulating the CIFs in the Crystallography Open Database (COD) has been developed. …”
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    COD::CIF::Parser: an error-correcting CIF parser for the Perl language
  13. 2593
    por Mitternacht, Simon
    Publicado 2016
    “…FreeSASA is an open source C library for SASA calculations that provides both command-line and Python interfaces in addition to its C API. The library implements both Lee and Richards’ and Shrake and Rupley’s approximations, and is highly configurable to allow the user to control molecular parameters, accuracy and output granularity. …”
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    FreeSASA: An open source C library for solvent accessible surface area calculations
  14. 2594
    por Möller, Johannes J., Bitzek, Erik
    Publicado 2016
    “…. • Availability as ready-to-use Python script for the widespread visualization tool OVITO [http://ovito.org].…”
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    BDA: A novel method for identifying defects in body-centered cubic crystals
  15. 2595
    “…Summary: We present Goldilocks: a Python package providing functionality for collecting summary statistics, identifying shifts in variation, discovering outlier regions and locating and extracting interesting regions from one or more arbitrary genomes for further analysis, for a user-provided definition of interesting. …”
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    Goldilocks: a tool for identifying genomic regions that are ‘just right’
  16. 2596
    por Kendrick, John, Burnett, Andrew D.
    Publicado 2016
    “…The Python package PDielec is described, which calculates the infrared absorption characteristics of a crystalline material supported in a non‐absorbing medium. …”
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    PDielec: The calculation of infrared and terahertz absorption for powdered crystals
  17. 2597
    “…We find that the DTCWT approach is capable of extracting intensities that are accurate to better than 2% across the whole range of scattering vector simulated, effectively independent of delay time. A Python package is available.…”
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    A general method for baseline-removal in ultrafast electron powder diffraction data using the dual-tree complex wavelet transform
  18. 2598
    “…This tool is implemented in an open-source python code located at code.google.com/p/ss-map…”
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    SS-map: Visualizing cooperative secondary structure elements in protein ensembles
  19. 2599
    “…The resulting software suite incorporates contributions from different collaborators by encapsulating them in Python task wrappers, which are then made accessible via a user-friendly graphical user interface as well as a command-line interface suitable for scripting. …”
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    Recent developments in the CCP-EM software suite
  20. 2600
    “…HgtSIM is implemented in Python3 and is freely available at: https://github.com/songweizhi/HgtSIM.…”
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    HgtSIM: a simulator for horizontal gene transfer (HGT) in microbial communities
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