“…It includes methods for preprocessing, visualization, clustering, pseudotime and trajectory inference, differential expression testing, and simulation of gene regulatory networks. Its Python-based implementation efficiently deals with data sets of more than one million cells (https://github.com/theislab/Scanpy). …”
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“…AVAILABILITY AND IMPLEMENTATION: PyBEL is implemented in platform-independent, universal Python code. Its source is distributed under the Apache 2.0 License at https://github.com/pybel. …”
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“…AVAILABILITY AND IMPLEMENTATION: FQC is implemented in Python 3 and Javascript, and is maintained under an MIT license. …”
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“…AMBER is implemented in Python and available under the Apache 2.0 license on GitHub.…”
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“…AVAILABILITY AND IMPLEMENTATION: The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. …”
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“…Here, we introduce a flexible Python toolbox that implements a set of advanced techniques for high-resolution neuroimaging. …”
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“…CONCLUSIONS: We have implemented this method in an open-source Python3 and Cython program, Mikado, available on GitHub.…”
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“…It is implemented in python, and internally generates R code for plotting.…”
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“…All the components of the platform were automated and controlled by a self‐written Python script. A user‐friendly software allows even inexperienced operators to perform automated screening of novel quenchers or Stern–Volmer analysis, thus accelerating and facilitating both reaction discovery and mechanistic studies. …”
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“…The database is available using Python, MySQL and HTML/Javascript Database URL: http://mirwalk.umm.uni-heidelberg.de.…”
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“…AVAILABILITY AND IMPLEMENTATION: pyseer is written in python and is freely available at https://github.com/mgalardini/pyseer, or can be installed through pip. …”
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“…We developed pywindow, a python package that enables the automated analysis of structural features of porous molecular materials, such as molecular cages. …”
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“…AVAILABILITY AND IMPLEMENTATION: All Python and R scripts used in this paper are available at https://github.com/dewyman/TranscriptClean.…”
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“…This data article also provides the Python code for data analysis. For feature extraction, a generic algorithm has also been incorporated, thereby, selecting important and relevant feature subset. …”
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“…One can also conveniently write Python programs for plant-care intelligence through the smart phone. …”
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“…AVAILABILITY AND IMPLEMENTATION: BlendMol is available free of charge from http://durrantlab.com/blendmol/. It is written in Python. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
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“…The first set of pairs connects snippets of source code in C, C++, Java, and Python with their corresponding comments, which are extracted using Doxygen. …”
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“…The dataset contains one-third-octave band tip noise spectra that have been processed using Acoular, a Python module for acoustic beamforming.…”
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“…In this work we propose a mathematical model to simulate Chikungunya spread; the spread model is implemented in a C++ cellular automata code defined on unstructured triangular grids and space visualizations are performed with Python. In order to simulate the time space spread of the Chikungunya diseases we include assumptions such as: heterogeneous human and vector densities, population mobility, geographically localized points of infection using geographical information systems, changes in the probabilities of infection, extrinsic incubation and mosquito death rate due to environmental variables. …”
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“…The analysis software is available as the protaccel Python package.…”
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