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  1. 2961
    “…In this paper, we present a novel python library called MDTS (Materials Design using Tree Search). …”
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    MDTS: automatic complex materials design using Monte Carlo tree search
  2. 2962
    “…Here, we briefly describe the real-time fMRI data that is provided for testing the functionality of the open-source Python/Matlab framework for neurofeedback, termed Open NeuroFeedback Training (OpenNFT, Koush et al. [1]). …”
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    Real-time fMRI data for testing OpenNFT functionality
  3. 2963
    “…BioXTAS RAW is a graphical-user-interface-based free open-source Python program for reduction and analysis of small-angle X-ray solution scattering (SAXS) data. …”
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    BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis
  4. 2964
    “…HaSAPPy is implemented in Python, licensed under the MIT license, and is available from https://github.com/gdiminin/HaSAPPy.…”
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    HaSAPPy: A tool for candidate identification in pooled forward genetic screens of haploid mammalian cells
  5. 2965
    “…In this contribution, it has been presented an image processing software, Python based image analysis for cell growth (PIACG), that is able to calculate the total area of the well occupied by cells with fusiform and rounded morphology in response to different concentrations of fetal bovine serum in microfluidic chips, from microscopy images in transmission light, in a highly efficient way.…”
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    Development of image analysis software for quantification of viable cells in microchips
  6. 2966
    “…With Jflow, we introduce a Workflow Management System (WMS), composed of jQuery plug-ins which can easily be embedded in any web application and a Python library providing all requested features to setup, run and monitor workflows. …”
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    Jflow: a workflow management system for web applications
  7. 2967
    “…AVAILABILITY AND IMPLEMENTATION: MD-TASK has been open-sourced and is available for download from https://github.com/RUBi-ZA/MD-TASK, implemented in Python and supported on Linux/Unix.…”
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    MD-TASK: a software suite for analyzing molecular dynamics trajectories
  8. 2968
    “…DiffiQult is a software package written in plain Python with minimal deviation from standard code which illustrates the capability of AD to save human effort and time in implementations of exact gradients in quantum chemistry. …”
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    Automatic Differentiation in Quantum Chemistry with Applications to Fully Variational Hartree–Fock
  9. 2969
    “…All the temporal network measures and plotting functions described in this article are freely available as the Python package Teneto.…”
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    From static to temporal network theory: Applications to functional brain connectivity
  10. 2970
    “…Here we present an application programming interface (API) for RINspector 1.1.0 that enables interplay between Cytoscape, RINspector and external languages, such as R or Python. This API provides easy access to batch centrality calculations and flexibility predictions, and allows for the easy comparison of results between different structures. …”
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    Comparing protein structures with RINspector automation in Cytoscape
  11. 2971
    “…Our goal was to import the diverse adjacency matrix formats produced by existing scripts and libraries written in R, MATLAB, and Python, and facilitate importing that data into Cytoscape. …”
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    aMatReader: Importing adjacency matrices via Cytoscape Automation
  12. 2972
    “…. • The reproducible data analysis technique matches similar comparative methods such as Matlab and Python.…”
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    A methodological approach to the air-sea energy fluxes data collection and analysis at the tropical coastal ocean
  13. 2973
    “…This paper details a software ecosystem comprising three free and open-source Python packages for processing raw ultrafast electron scattering (UES) data and interactively exploring the processed data. …”
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    An open-source software ecosystem for the interactive exploration of ultrafast electron scattering data
  14. 2974
    “…This research used Netvizz to download Facebook data, word clouds in R for text mining, a log-likelihood measure in R to compare texts and TextBlob Python library for sentiment analysis. The Facebook analysis shows that posts with photos and positive comments have the highest engagement. …”
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    Mining Facebook Data of People with Rare Diseases: A Content-Based and Temporal Analysis
  15. 2975
    “…AVAILABILITY AND IMPLEMENTATION: All code (predominantly JavaScript and Python) is freely available from github.com/nextstrain and the web-application is available at nextstrain.org.…”
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    Nextstrain: real-time tracking of pathogen evolution
  16. 2976
    “…Reference-free autopicking with Laplacian-of-Gaussian filtering and execution of jobs from python allows non-interactive processing during acquisition, including 2D-classification, de novo model generation and 3D-classification. …”
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    New tools for automated high-resolution cryo-EM structure determination in RELION-3
  17. 2977
    por Durandetto, Paolo, Sosso, Andrea
    Publicado 2018
    “…This paper presents an open-source package developed in Python that controls and drives a programmable Josephson array to synthesize dc and ac quantum-accurate voltages. …”
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    A modular and customizable open-source package for quantum voltage standards operation and control
  18. 2978
    “…AVAILABILITY AND IMPLEMENTATION: SonicParanoid is available with a GNU GPLv3 license on the Python Package Index and BitBucket. Documentation is available at http://iwasakilab.bs.s.u-tokyo.ac.jp/sonicparanoid. …”
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    SonicParanoid: fast, accurate and easy orthology inference
  19. 2979
    “…RESULTS: InSilicoSeq is implemented in Python and capable of simulating realistic Illumina (meta) genomic data in a parallel fashion with sensible default parameters. …”
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    Simulating Illumina metagenomic data with InSilicoSeq
  20. 2980
    “…We provide an efficient and easy-to-use implementation of the OptCouple algorithm in the cameo Python package for computational strain design.…”
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    OptCouple: Joint simulation of gene knockouts, insertions and medium modifications for prediction of growth-coupled strain designs
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