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  1. 3201
    por Freyman, William A.
    Publicado 2015
    “…SUMAC is implemented as a Python package that can run as a stand-alone command-line program, or its modules and objects can be incorporated within other programs. …”
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    SUMAC: Constructing Phylogenetic Supermatrices and Assessing Partially Decisive Taxon Coverage
  2. 3202
    “…Data was processed with R, Python and EpiInfo to calculate years of potential life lost for the leading causes of death on each of the 78 municipalities in the island. …”
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    SalHUD—A Graphical Interface to Public Health Data in Puerto Rico †
  3. 3203
    “…Clonify is freely available at www.github.com/briney/clonify-python.…”
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    Clonify: unseeded antibody lineage assignment from next-generation sequencing data
  4. 3204
    “…This paper presents Hummingbird, an open-source scalable Python-based software tool for real-time analysis of diffraction data with the purpose of giving users immediate feedback during their experiments. …”
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    Hummingbird: monitoring and analyzing flash X-ray imaging experiments in real time
  5. 3205
    “…Condor is designed to be easy to use and can be either installed as a Python package or used from its web interface (http://lmb.icm.uu.se/condor). …”
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    Condor: a simulation tool for flash X-ray imaging
  6. 3206
    “…Availability and implementation: The source code is available for free at http://www.protein.osaka-u.ac.jp/rcsfp/pi/mdcctools/, implemented in C ++ and Python, and supported on Linux. Contact: kota.kasahara@protein.osaka-u.ac.jp Supplementary information: Supplementary data are available at Bioinformatics online.…”
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    mDCC_tools: characterizing multi-modal atomic motions in molecular dynamics trajectories
  7. 3207
    “…The website www.sbtab.net provides online tools for syntax validation and conversion to SBML and HTML, as well as software for using SBtab in MS Excel, MATLAB and R. The stand-alone Python code contains functions for file parsing, validation, conversion to SBML and HTML and an interface to SQLite databases, to be integrated into Systems Biology workflows. …”
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    SBtab: a flexible table format for data exchange in systems biology
  8. 3208
    “…Availability and Implementation: MOCAT2 is implemented in Perl 5 and Python 2.7, designed for 64-bit UNIX systems and offers support for high-performance computer usage via LSF, PBS or SGE queuing systems; source code is freely available under the GPL3 license at http://mocat.embl.de. …”
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    MOCAT2: a metagenomic assembly, annotation and profiling framework
  9. 3209
    “…Processing scripts are written in the Python programming language and executed so that the low-level Java commands are automatically run in parallel on computers with multiple cores or CPUs. …”
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    NMRFx Processor: a cross-platform NMR data processing program
  10. 3210
    “…CellProfiler Analyst 2.0, completely rewritten in Python, builds on these features and adds enhanced supervised machine learning capabilities (Classifier), as well as visualization tools to overview an experiment (Plate Viewer and Image Gallery). …”
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    CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets
  11. 3211
    “…CONCLUSIONS: Our polynomial algorithm for checking consistency has been implemented in Python and is available at https://github.com/UdeM-LBIT/OrthoPara-ConstraintChecker.…”
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    On the consistency of orthology relationships
  12. 3212
    “…Scoary is implemented in Python and is available under an open source GPLv3 license at https://github.com/AdmiralenOla/Scoary. …”
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    Rapid scoring of genes in microbial pan-genome-wide association studies with Scoary
  13. 3213
    “…In this manner, we detail the VHDL descriptions of chaos generators for fast prototyping from high-level programming using Python. The cases of study are three kinds of chaos generators based on piecewise-linear (PWL) functions that can be systematically augmented to generate even and odd number of scrolls. …”
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    VHDL Descriptions for the FPGA Implementation of PWL-Function-Based Multi-Scroll Chaotic Oscillators
  14. 3214
    “…Furthermore, we introduce an open source Python library that can be freely downloaded from GitHub and we use it in a simple case study to evaluate the evolution of FI for the global-mean temperature from 1880 to 2015. …”
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    Using Fisher information to track stability in multivariate systems
  15. 3215
    “…The software for controlling the synthesis robot was written in the python programming language and hard-coded for the synthesis of ibuprofen by the method described, opening possibilities for the sharing of validated synthetic ‘programs’ which can run on similar low cost, user-constructed robotic platforms towards an ‘open-source’ regime in the area of chemical synthesis.…”
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    The digital code driven autonomous synthesis of ibuprofen automated in a 3D-printer-based robot
  16. 3216
    “…Arpeggio is implemented in Python and available as a user-friendly web interface at http://structure.bioc.cam.ac.uk/arpeggio/ and as a downloadable package at https://bitbucket.org/harryjubb/arpeggio.…”
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    Arpeggio: A Web Server for Calculating and Visualising Interatomic Interactions in Protein Structures
  17. 3217
    “…SUMMARY: We introduce the caspo toolbox, a python package implementing a workflow for reasoning on logical networks families. …”
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    caspo: a toolbox for automated reasoning on the response of logical signaling networks families
  18. 3218
    “…The calculations are presented in an Excel datasheet and a computational algorithm was developed in the free software Python. The kinetic parameters of the substrate uncompetitive inhibition equation V(max), K(m) and K(s) were calculated using three experimental points from the dataset formed by 13 experimental points. …”
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    Calculation of statistic estimates of kinetic parameters from substrate uncompetitive inhibition equation using the median method
  19. 3219
    por Marcus, Joseph H, Novembre, John
    Publicado 2017
    “…AVAILABILITY AND IMPLEMENTATION: GGV is implemented as a website (http://popgen.uchicago.edu/ggv/) which employs an API to access frequency data (http://popgen.uchicago.edu/freq_api/). Python and javascript source code for the website and the API are available at: http://github.com/NovembreLab/ggv/ and http://github.com/NovembreLab/ggv-api/. …”
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    Visualizing the geography of genetic variants
  20. 3220
    “…In addition, it can be used to develop custom software for integrating modeling with experimental data processing workflows, facilitated by a comprehensive Python interface to solvers implemented in C++. This article links to two reproducible example problems, showing how the library can be used to build simulations of tumor growth and angiogenesis with realistic vessel networks.…”
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    Microvessel Chaste: An Open Library for Spatial Modeling of Vascularized Tissues
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