“…In order to build the dataset, DBF files were downloaded from DATASUS ftp repository and converted to CSV format, the R programming language, and then the CSV files were processed using Python programming language. Features with incorrect values and unknowing information were removed.…”
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“…EAT-UpTF (Enrichment Analysis Tool for Upstream Transcription Factors of a group of plant genes) is an open-source Python script that analyzes the enrichment of upstream transcription factors (TFs) in a group of genes-of-interest (GOIs). …”
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“…Epiclomal is written in R and Python and is available at https://github.com/shahcompbio/Epiclomal.…”
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“…Initial preprocessing was applied by using a normalization test and principal component analysis in Python. Then DNNs neural network designed and implemented to the data and finally results cross-validated by classifiers. …”
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“…Here, we present Context‐specific Essentiality Network‐tools (CEN‐tools), a website and python package, in which users can interrogate the essentiality of a gene from large‐scale genome‐scale CRISPR screens in a number of biological contexts including tissue of origin, mutation profiles, expression levels and drug responses. …”
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“…HybridMine is developed in Python, Perl, and Bash programming languages and is available in GitHub.…”
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“…Finally, we make our implementation freely available as open source software in Python.…”
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“…The program has similar capabilities with PyXNAT and XNATpy, which were developed for Python users. Rxnat was developed to address the increased popularity of R among neuroimaging researchers. …”
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“…To create this human pancreas-specific biological imaging resource, we developed a React-based web application and Python-based application programming interface, collectively called Flexible Framework for Integrating and Navigating Data (FFIND), which can be adapted beyond Pancreatlas to meet countless imaging or other structured data-management needs.…”
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“…AVAILABILITY AND IMPLEMENTATION: MitoTrack is an open source Python software, embedded within a graphical user interface (download here). …”
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“…We offer a modular environment in the python package MORESIM that allows custom design of replica exchange simulations with any level of theory including ML-based potentials. …”
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“…We examined MD and language system responses to code written in Python, a text-based programming language (Experiment 1) and in ScratchJr, a graphical programming language (Experiment 2); for both, we contrasted responses to code problems with responses to content-matched sentence problems. …”
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“…A Standardised Precipitation Index (SPI) computed from long-term precipitation data measured from six meteorological stations was used to determine drought occurrence and severity. Python software (Version 3.6) was applied on the SPI values to predict the recurrence of drought events over time in years. …”
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“…Here, we present SMAca, the first python tool to detect SMA carriers and estimate the absolute SMN1 copy‐number using NGS data. …”
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“…We implemented our algorithm for miRNA function prediction into a Python module, which is available at GitHub.…”
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“…The experimental design of basic error evaluation is optimized accordingly and verified by both Monte Carlo simulation and experiments. An easy-to-run Python source code is provided to illustrate the establishment of the ITC measurement model and the estimation of heat variances. …”
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“…The CICO algorithm is implemented in a software package freely available in Julia (https://github.com/insysbio/LikelihoodProfiler.jl) and Python (https://github.com/insysbio/LikelihoodProfiler.py).…”
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“…These modules were tested extensively on simulated and experimental data and outperformed generic approaches. GRACy is written in Python and is embedded in a graphical user interface with all required dependencies installed by a single command. …”
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“…DEER-PREdict is open source (GPLv3) and available at github.com/KULL-Centre/DEERpredict and as a Python PyPI package pypi.org/project/DEERPREdict.…”
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“…Based on our constructed pairwise sequence alignment algorithm component library and the convenient software platform PAR, a few expansion domain components are developed for multiple sequence alignment application domain, and specific multiple sequence alignment algorithm can be designed, and its corresponding program, i.e., C++/Java/Python program, can be generated efficiently and thus enables the improvement of the development efficiency of complex algorithms, as well as accuracy of sequence alignment calculation. …”
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