“…Here, we present Pyhamilton, an open‐source Python platform that can execute complex pipetting patterns required for custom high‐throughput experiments such as the simulation of metapopulation dynamics. …”
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“…Overall, AmphiScan stands as fast, accurate, and highly-customizable protocol that can be pipelined with other Rosetta and Python applications.…”
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“…AVAILABILITY AND IMPLEMENTATION: SVIM-asm has been implemented in Python and can be easily installed via bioconda. Its source code is available at github.com/eldariont/svim-asm. …”
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“…In this article, we present the first attempt at creating a standardized, open-source Python package. A number of tools will be integrated and developed that we envisage will become the obvious starting point for software development projects within biofoundries globally. …”
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“…We introduce an open-source Python package, WormPose, for 2D pose estimation in C. elegans, including self-occluded, coiled shapes. …”
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“…Differently from existing methods, CBP-JMF is based on a joint non-negative matrix tri-factorization framework and is implemented in Python. As a pragmatic application, we apply CBP-JMF to identify CBPs for four subtypes of breast cancer. …”
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“…The toolbox provides two methods for screening single cells, three common methods for smoothing scHi-C data, three efficient methods for calculating the pairwise similarity of cells, three methods for embedding single cells, three methods for clustering cells, and a build-in function to visualize the cells embedding in a two-dimensional or three-dimensional plot. scHiCTools, written in Python3, is compatible with different platforms, including Linux, macOS, and Windows.…”
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“…From the obtained data, 3D magnetic field images using spline interpolation algorithms written in the Python programming language were created. The visualization of the measured magnetic field in the 3D plots offer an innovative view of the spatial distribution of the magnetic field in the area of interest.…”
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“…Though a powerful hypothesis-generating tool, DeepFrag is currently implemented in Python and so requires a certain degree of computational expertise. …”
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“…The features of these new indices are studied in detail with analysis of variance (ANOVA), and demonstrated with three case studies of protein/DNA sequences with varying degrees of similarity (or evolutionary proximity). The Python code for the extended many-item similarity indices is publicly available at: https://github.com/ramirandaq/tn_Comparisons.…”
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“…We provide the full instructions for replicating the instrument mostly from off-the-shelf components and accessible, user-friendly, open-source Python control software. Therefore, cryoSIM democratizes the ability to detect molecules using super-resolution fluorescence imaging of cryopreserved specimens for correlation with their cellular ultrastructure.…”
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“…Each tutorial describes a graph concept along with executable Python code that can be interactively run on a graph. …”
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“…DATA AVAILABILITY AND IMPLEMENTATION: PROTOCOL is available as both a stand-alone Python library, and as part of a R Shiny application at https://github.com/clangmead/PROTOCOL. …”
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“…AVAILABILITY AND IMPLEMENTATION: Compartor is provided as a Python package and is available at https://pypi.org/project/compartor/. …”
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“…The development of the ABR model is based on the Python programming language, using the 4265 records from the Long-Term Pavement Performance (LTPP) that include the pavement thickness, service age, average annual daily truck traffic (AADTT), gator cracks, etc., which are reliable data that are preserved after years of monitoring. …”
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“…Upper-division undergraduate students develop advanced Python programming and data analysis skills with real-world oncology data which integrates proteomics and genomics. …”
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“…Here, we present MOrgAna, a Python-based software that implements machine learning to segment images, quantify and visualize morphological and fluorescence information of organoids across hundreds of images, each with one object, within minutes. …”
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“…We tested six classical peak tracking methods on the results of the factorial design of the experiment applied to a homemade FBG humidity sensor. We used Python programming to compute, from the raw spectral data with six typical peak search algorithms, the temperature, strain and humidity sensitivities, as well as the cross-sensitivities, and showed that results are consistent for all algorithms, provided that the points selected to make the computation are correctly chosen. …”
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“…RESULTS: Molywood is a Python-based script that uses an integrated workflow to give maximal flexibility in movie design. …”
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“…The number of high-resolution reconstructions continues to grow, increasing the importance of the accurate determination of atomic coordinates. Here, a new Python package and program called Servalcat is presented that is designed to facilitate atomic model refinement. …”
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