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  1. 3761
    “…NMRFAM-SPARKY has been repackaged with current versions of Python and Tcl/Tk, which support new tools for NMR peak simulation and graphical assignment determination. …”
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    NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy
  2. 3762
    “…Availability and implementation: Code in Java and Python along with instructions to download the reads and variants is at http://bioinform.github.io/varsim. …”
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    VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications
  3. 3763
    “…We processed 826 documents by both systems and verified that MedEx-UIMA and MedEx (the Python version) performed similarly by comparing both results. …”
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    Extracting and standardizing medication information in clinical text – the MedEx-UIMA system
  4. 3764
    “…For the first time, this software is publicly available, alongside an easier-to-use reimplementation of the same algorithms in Python. Both versions of SCT have been released as open-source software under the Apache 2 license and are available for download from https://github.com/dww100/sct.…”
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    SCT: a suite of programs for comparing atomistic models with small-angle scattering data
  5. 3765
    “…The program, written in Python, and the dataset used in this paper are available at http://bioinfo.lifl.fr/procars/.…”
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    ProCARs: Progressive Reconstruction of Ancestral Gene Orders
  6. 3766
    “…The API has already been adopted by a few applications and standalone tools such as PeptideShaker, PRIDE Inspector, the Unipept web application and the Python-based BioServices package. This application is free and open to all users with no login requirement and can be accessed at http://www.ebi.ac.uk/pride/ws/archive/.…”
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    Introducing the PRIDE Archive RESTful web services
  7. 3767
    “…The application uses a unique query language with Python-like syntax to define the patterns that will be extracted from datasets provided by the user, or from the entire Protein Data Bank (PDB). …”
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    PatternQuery: web application for fast detection of biomacromolecular structural patterns in the entire Protein Data Bank
  8. 3768
    “…PLIP stands out by offering publication-ready images, PyMOL session files to generate custom images and parsable result files to facilitate successive data processing. The full python source code is available for download on the website. …”
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    PLIP: fully automated protein–ligand interaction profiler
  9. 3769
    “…Bindings to different programming languages are provided (Python and R). We illustrate the purpose of the tool with several case studies using pathway maps created by different research groups, in which data visualization provides new insights into molecular mechanisms involved in systemic diseases such as cancer and neurodegenerative diseases.…”
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    NaviCell Web Service for network-based data visualization
  10. 3770
    “…Availability and implementation: Code in Python is at http://bioinform.github.io/metasv/. Contact: rd@bina.com Supplementary information: Supplementary data are available at Bioinformatics online.…”
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    MetaSV: an accurate and integrative structural-variant caller for next generation sequencing
  11. 3771
    “…The Power Decoder simulator is written in R and Python and is available for download under the GNU General Public License v3.0.…”
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    The Power Decoder Simulator for the Evaluation of Pooled shRNA Screen Performance
  12. 3772
    “…RESULTS: We have developed a new Python command line tool, which is compatible with the widely adopted BIOM format, for microbial ecologists that implements information-theoretic subset selection methods for biological data formats. …”
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    Fizzy: feature subset selection for metagenomics
  13. 3773
    “…ASSIsT is developed in Python and runs in Windows and Linux. Availability and implementation: The software, example data sets and tutorials are freely available at http://compbiotoolbox.fmach.it/assist/. …”
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    ASSIsT: an automatic SNP scoring tool for in- and outbreeding species
  14. 3774
    “…Programmatic access has been improved by the introduction of a library, libChEBI, in Java, Python and Matlab. Furthermore, we have added two new tools, namely an analysis tool, BiNChE, and a query tool for the ontology, OntoQuery.…”
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    ChEBI in 2016: Improved services and an expanding collection of metabolites
  15. 3775
    por Simmons, Sean, Berger, Bonnie
    Publicado 2016
    “…Availability and implementation: A python implementation is available at http://groups.csail.mit.edu/cb/DiffPriv/. …”
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    Realizing privacy preserving genome-wide association studies
  16. 3776
    “…Availability and implementation: The clustering algorithm is implemented in Python and is freely available at https://bitbucket.org/youngjh/nsclc_paper. …”
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    Computational discovery of pathway-level genetic vulnerabilities in non-small-cell lung cancer
  17. 3777
    “…Computer codes (in Matlab and Python) have been developed to calculate these anisotropic elasticity parameters for a silicon crystal in any orientation. …”
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    Anisotropic elasticity of silicon and its application to the modelling of X-ray optics
  18. 3778
    “…The presented tools have been written in Python, so they are multiplatform, portable and easy to read. …”
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    Chromosome Territory Modeller and Viewer
  19. 3779
    “…Besides the interactive web interface, g:Profiler can be accessed in computational pipelines using our R package, Python interface and BioJS component. g:Profiler is freely available at http://biit.cs.ut.ee/gprofiler/.…”
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    g:Profiler—a web server for functional interpretation of gene lists (2016 update)
  20. 3780
    “…Availability and Implementation: Tools4miRs is implemented in Python using Django and is freely available at tools4mirs.org. …”
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    Tools4miRs – one place to gather all the tools for miRNA analysis
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