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  1. 3901
    “…We made this model openly accessible through a cloud-based webserver and python code available at https://sites.google.com/view/wajidarshad/software and https://github.com/wajidarshad/ESIDE.…”
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    ESIDE: A computationally intelligent method to identify earthworm species (E. fetida) from digital images: Application in taxonomy
  2. 3902
    por Miotto, Mattia, Monacelli, Lorenzo
    Publicado 2021
    “…We present ToloMEo (TOpoLogical netwOrk Maximum Entropy Optimization), a program implemented in C and Python that exploits a maximum entropy algorithm to evaluate network topological information. …”
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    TOLOMEO, a Novel Machine Learning Algorithm to Measure Information and Order in Correlated Networks and Predict Their State
  3. 3903
    “…Data was analyzed with the Logistic Regression, Decision Tree, Random Forest, XGBoost, and Gradient Boosting functions in Python with the Sci-Kit learn package. Prediction accuracy and area under the curve (AUC) were calculated. (3) Results: 1281 posterior patients were analyzed. …”
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    Machine Learning Prediction of Length of Stay in Adult Spinal Deformity Patients Undergoing Posterior Spine Fusion Surgery
  4. 3904
    “…Here, we present Geonomics, a Python package for performing complex, spatially explicit, landscape genomic simulations with full spatial pedigrees that dramatically reduces user workload yet remains customizable and extensible because it is embedded within a popular, general-purpose language. …”
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    Geonomics: Forward-Time, Spatially Explicit, and Arbitrarily Complex Landscape Genomic Simulations
  5. 3905
    “…These tools lay the foundation for a suite of open-source methods to process and analyze high-throughput optical mapping data. The Python implementations of the OptiTools are publicly available through http://www.bif.wur.nl/.…”
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    Signal-based optical map alignment
  6. 3906
    “…A 3D mesh of the posterior circulation was reconstructed (with ITK SNAP software) and the morphology of the vertebrobasilar system analyzed with an in-house software written in Python. RESULTS: Patients were assigned into a group with WMH (n = 204) and a group without WMH (n = 86). …”
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    Laterality of deep white matter hyperintensities correlates with basilar artery bending and vertebral artery dominance
  7. 3907
    “…To better understand protein interactor recognition mechanisms across the Nedd4 family, we report the development and implementation of a python-based tool, PxYFinder, to identify PY motifs in the primary sequences of previously identified interactors of Nedd4 and related ligases. …”
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    Predicting PY motif-mediated protein-protein interactions in the Nedd4 family of ubiquitin ligases
  8. 3908
    “…The IMU data analysis software was developed in Python and has three fusion filters: Complementary Filter, Kalman Filter, and Madgwick Filter. …”
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    Development of a Low-Cost Open-Source Measurement System for Joint Angle Estimation
  9. 3909
    “…We show that traditional methods such as hierarchical and kmeans clusterings lead to cell type clusters that are more dispersed on the tree than our tree-based algorithm. We provide a python package, chromcocluster, that implements the algorithms presented.…”
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    Tree-Based Co-Clustering Identifies Chromatin Accessibility Patterns Associated With Hematopoietic Lineage Structure
  10. 3910
    “…However, the development of computational tools to support the creation of these diagrams is currently hampered by an excessive burden in maintenance due to the large and expanding number of glyphs present in the standard. Here, we present a Python package called paraSBOLv that enables access to the full suite of SBOLv glyphs through the use of machine-readable parametric glyph definitions. …”
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    paraSBOLv: a foundation for standard-compliant genetic design visualization tools
  11. 3911
    “…Automated control is possible from Python and Matlab, or any language that supports HTTP requests. …”
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    Simplifying the OpenFlexure microscope software with the web of things
  12. 3912
    “…The source code is based on open-source tools and is organized as a Python package. Tasks can be executed individually or within the context of scalable, robust workflows. …”
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    Pseudonatural Products Occur Frequently in Biologically Relevant Compounds
  13. 3913
    “…FINDINGS: Herein, we present an extension of CNVnator developed in Python—CNVpytor. CNVpytor inherits the reimplemented core engine of its predecessor and extends visualization, modularization, performance, and functionality. …”
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    CNVpytor: a tool for copy number variation detection and analysis from read depth and allele imbalance in whole-genome sequencing
  14. 3914
    por Choi, Wansuk, Heo, Seoyoon
    Publicado 2021
    “…We conducted transfer learning by combining a pre-trained convolution neural network (CNN) model into a Python-produced deep learning process. Videos were processed on YouTube and 103,116 frames converted from video clips were analyzed. …”
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    Deep Learning Approaches to Automated Video Classification of Upper Limb Tension Test
  15. 3915
    “…Downstream analysis is simplified by a standard definition format, modularity of components, and metadata APIs in R and Python. It is restartable, fault-tolerant, and can be run on local hardware, using any cluster resource manager, or in provided Linux containers. …”
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    PEPATAC: an optimized pipeline for ATAC-seq data analysis with serial alignments
  16. 3916
    “…The database was implemented in Python. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
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    2DProts: database of family-wide protein secondary structure diagrams
  17. 3917
    “…ProteinLens is implemented in Python/SQL and freely available to use at: www.proteinlens.io.…”
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    ProteinLens: a web-based application for the analysis of allosteric signalling on atomistic graphs of biomolecules
  18. 3918
    “…AVAILABILITY AND IMPLEMENTATION: The Python code for the algorithm and for measuring performance, along with all data needed to recreate the results is freely available at 10.5281/zenodo.5108416 and 10.5281/zenodo.4540092. …”
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    spheresDT/Mpacts-PiCS: cell tracking and shape retrieval in membrane-labeled embryos
  19. 3919
    por Liu, Bin, Li, Lin
    Publicado 2021
    “…In addition, we proposed a method to measure internal-control willingness based on text analysis and principal component analysis using Python, and then, we tested its impact on ICQ and MOC. …”
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    Internal-Control Willingness and Managerial Overconfidence
  20. 3920
    “…RESULTS: We developed VOLTA, a Python package suited for complex co-expression network analysis. …”
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    VOLTA: adVanced mOLecular neTwork Analysis
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