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  1. 4141
    por Wu, Zhongjia, Wu, Yufeng, Gao, Jingyang
    Publicado 2020
    “…InvBFM is written in Python and Shell and is available for download at https://github.com/wzj1234/InvBFM.…”
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    InvBFM: finding genomic inversions from high-throughput sequence data based on feature mining
  2. 4142
    por Chu, Yanshuo, Nie, Chenxi, Wang, Yadong
    Publicado 2020
    “…Source code is publicly available as a Python package at https://github.com/dustincys/msphy-SCNAClonal.…”
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    A Pipeline for Reconstructing Somatic Copy Number Alternation’s Subclonal Population-Based Next-Generation Sequencing Data
  3. 4143
    “…KITE’s core is written in C++, with a versatile Python-based interface, and is fully optimized for shared memory multi-node CPU architectures, thus scalable, efficient and fast. …”
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    KITE: high-performance accurate modelling of electronic structure and response functions of large molecules, disordered crystals and heterostructures
  4. 4144
    “…All data analysis was performed using Python packages Scipy and Stats models. RESULTS: According to the biochemical and PCR analyses, among 400 Enterococcus species, 72% of samples were Enterococcus faecalis, 10.75% Enterococcus faecium, and 17.25% other Enterococcus species. …”
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    Assessment of Susceptibility to Five Common Antibiotics and Their Resistance Pattern in Clinical Enterococcus Isolates
  5. 4145
    “…African pythons (Pythonidae) and large vipers (Bitis spp.) act as definitive hosts for Armillifer armillatus and Armillifer grandis parasites (Crustacea: Pentastomida) in the Congo Basin. …”
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    Armillifer-Infected Snakes Sold at Congolese Bushmeat Markets Represent an Emerging Zoonotic Threat
  6. 4146
    “…We implemented a compact and easy to visualize algorithm and interface in Python. This software uses time series as input. We applied the maxclique graph operator in order to obtain further graph parameters. …”
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    Characterization and Classification of Electrophysiological Signals Represented as Visibility Graphs Using the Maxclique Graph
  7. 4147
    por Polishchuk, Pavel
    Publicado 2020
    “…The framework was implemented as an open-source Python module and can be used to create custom workflows for the exploration of chemical space.…”
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    CReM: chemically reasonable mutations framework for structure generation
  8. 4148
    “…Functionalities in the Python package py4xs have been developed to support automated data processing, including azimuthal averaging, merging data from multiple detectors, buffer scattering subtraction, data storage in HDF5 format and exporting the final data in a three-column text format that is acceptable by most data analysis tools. …”
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    Solution scattering at the Life Science X-ray Scattering (LiX) beamline
  9. 4149
    “…Here, we introduce an accessibility pattern-based epigenomic clustering (APEC) method, which classifies each cell by groups of accessible regions with synergistic signal patterns termed “accessons”. This python-based package greatly improves the accuracy of unsupervised single-cell clustering for many public datasets. …”
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    APEC: an accesson-based method for single-cell chromatin accessibility analysis
  10. 4150
    “…Timemory components are developed in C++ but includes multi-language support for C, Fortran, and Python codes. Numerous components are provided by the library itself – including, but not limited to, timers, memory usage, hardware counters, and FLOP and instruction roofline models. …”
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    Timemory: Modular Performance Analysis for HPC
  11. 4151
    “…The workflow is based on free and open—source software, namely R, Python, Linux shell scripts, the Geospatial Data Abstraction Library, custom FORTRAN, C++, and the GNU Make utilities. …”
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    A Workflow for Automated Satellite Image Processing: from Raw VHSR Data to Object-Based Spectral Information for Smallholder Agriculture
  12. 4152
    por Schälte, Yannik, Hasenauer, Jan
    Publicado 2020
    “…AVAILABILITY AND IMPLEMENTATION: The developed algorithms are made publicly available as part of the open-source python toolbox pyABC (https://github.com/icb-dcm/pyabc). …”
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    Efficient exact inference for dynamical systems with noisy measurements using sequential approximate Bayesian computation
  13. 4153
    “…With the number of fruits detected and tree coordinates two shapefile using Python script in Google Colab were generated. With the previous information two yield maps were displayed: one with information per tree and another with information per tree row. …”
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    A Cloud-Based Environment for Generating Yield Estimation Maps From Apple Orchards Using UAV Imagery and a Deep Learning Technique
  14. 4154
    “…The program makes use of the CSD Python API, which is also distributed with the CSD.…”
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    MrPIXEL: automated execution of Pixel calculations via the Mercury interface
  15. 4155
    por Tarek, Mohammad, Savarino, Andrea
    Publicado 2020
    “…Mathematical modeling was implemented using Python programming language v 3.7. RESULTS: According to mathematical modeling, hydroxychloroquine may have an impact on the amplitude of the viral load peak and viral clearance if the drug is administered early enough (i.e., when the virus is still confined within the pharyngeal cavity). …”
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    Pharmacokinetic Basis of the Hydroxychloroquine Response in COVID-19: Implications for Therapy and Prevention
  16. 4156
    “…We implemented the proposed approach in the open-source Python Parameter EStimation TOolbox (pyPESTO) to facilitate reuse and extension. …”
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    Parameterization of mechanistic models from qualitative data using an efficient optimal scaling approach
  17. 4157
    “…AVAILABILITY AND IMPLEMENTATION: AlphaFamImpute is available as a Python package from the AlphaGenes website http://www.AlphaGenes.roslin.ed.ac.uk/AlphaFamImpute. …”
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    AlphaFamImpute: high-accuracy imputation in full-sib families from genotype-by-sequencing data
  18. 4158
    “…The Pyneal toolkit is python-based software that offers a flexible and user friendly framework for rt-fMRI, is compatible with all three major scanner manufacturers (GE, Siemens, Phillips), and, critically, allows fully customized analysis pipelines. …”
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    Pyneal: Open Source Real-Time fMRI Software
  19. 4159
    por Blumenberg, Lili, Ruggles, Kelly V.
    Publicado 2020
    “…RESULTS: We present hypercluster, a python package and SnakeMake pipeline for flexible and parallelized clustering evaluation and selection. …”
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    Hypercluster: a flexible tool for parallelized unsupervised clustering optimization
  20. 4160
    “…METHODS: Through the use of free Business Intelligence tools and Python data science language we designed a real-time monitoring system, which was implemented to explore the Electronic Medical Records system of a university mental health emergency unit and render an electronic dashboard to support health professional daily practice. …”
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    Real-Time Monitoring System to Manage Mental Healthcare Emergency Unit
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