“…This is accomplished by providing an add-on (written in Python) for a free and open-source software package Blender.…”
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“…The generation of the inclusion list from MS2Planner was performed with python scripts available at https://github.com/lfnothias/IODA_MS. …”
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“…We perform feature extraction using Pyradiomics python package that quantizes brain MRI images using different texture analysis methods. …”
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“…Three different topic models—latent Dirichlet allocation (LDA) in GenSim, LDA in MALLET, and latent semantic analysis—were applied to the dataset with and without stemming using Python. RESULTS: LDA in MALLET without stemming was found to be the best topic model for this dataset. …”
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“…. • GRITI is an open-source Python 3 analysis codebase that encompasses the delta-vTEC processing and keogram algorithms. …”
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“…The code used in this work can be readily applied to neuron traces in SWC format and is available in our open-source Python package brainlit: http://brainlit.neurodata.io/.…”
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“…In fact, ERP will be affected by the external environment and individual factors. We used a Python script to collect 65,277 valid Weibo comments during the COVID-19 epidemic in China to assess urban residents’ environmental risk perception (ERP). …”
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“…The outcome of the model number of colonies that should be placed is presented to the user. The Python language was used for the model development. …”
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“…We have developed FLAME, a bioinformatics pipeline for alternative splicing analysis of gene-specific or transcriptome-wide long-read sequencing data. FLAME is a Python-based tool aimed at providing comprehensible quantification of full-length splice variants, reliable de novo recognition of splice sites and exons, and representation of consecutive exon connectivity in the form of a weighted adjacency matrix. …”
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“…The experiment was coded using an open-source python package and psychophysical data were collected from two observers. …”
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“…This study was based on the use of the artificial neural network (ANN), boosting, and AdaBoost ML approaches, based on the python coding to predict the compressive strength (CS) of high calcium fly-ash-based GPC. …”
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“…Deep Graph Library (DGL)-LifeSci is a python toolkit based on RDKit, PyTorch, and Deep Graph Library (DGL). …”
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“…AVAILABILITY AND IMPLEMENTATION: scConnect is open source and available as a Python package at https://github.com/JonETJakobsson/scConnect. scConnect is directly compatible with Scanpy scRNA-sequencing pipelines. …”
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“…AVAILABILITYAND IMPLEMENTATION: The cmd-iaso curation tool is implemented in Python 3.7+ and supports Linux, macOS and Windows. …”
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“…The model is constructed based on Solcore, an open-source Python-based library. A three-step-process is developed to create a hybrid quasi-3D model. …”
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“…This study explores the applications of hierarchical density-based spatial clustering of applications with noise (HDBSCAN) in terms of the direct diagnostic implications of applying agglomerative clustering in the spectroscopic analysis of malignant melanocytic lesions and benign dermatologic spots. 100 images of benign (n = 50) and malignant moles (n = 50) were sampled from the International Skin Imaging Collaboration Archive and processed through two separate Python algorithms. The first of which deconvolutes the three-digit tupled integer identifiers of pixel color in image composition into three separate matrices corresponding to the red, green and blue color channel. …”
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“…To test our hypotheses, we implemented a Python scraper to collect companies’ Instagram posts pre- and during the COVID-19 lockdown. …”
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“…Our work provides a framework for use of SOM in human pathology to resolve cellular composition of complex human tissues. We provide a python implementation and an easy-to-use docker deployment, enabling researchers to effortlessly featurize digitalized H&E-stained tissue.…”
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“…METHODS: A computational model of RPE loss was created in Python 3.7, which constructed an array of RPE cells clusters, binarized as either live or atrophic. …”
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“…AVAILABILITY AND IMPLEMENTATION: The proposed approach is implemented in the open-source Python Parameter EStimation TOolbox (pyPESTO). pyPESTO is available at https://github.com/ICB-DCM/pyPESTO. …”
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