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  1. 4461
    “…We also present a novel method, RGmatch, a flexible and easy-to-use Python tool that computes associations either at the gene, transcript, or exon level, applying a set of rules to annotate each region-gene association with the region location within the gene. …”
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    RGmatch: matching genomic regions to proximal genes in omics data integration
  2. 4462
    “…The tool has been implemented in python and the source-code is freely available at https://github.com/nisheth/MeFiT. …”
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    MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing
  3. 4463
    “…The evaluation methodology can be combined with existing approaches such as Interval Mapping. Python scripts are available at http://lbm.niddk.nih.gov/vipulp/. …”
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    Block network mapping approach to quantitative trait locus analysis
  4. 4464
    “…In addition, the database can be also accessed through a RESTful API. Lastly, a Python client and a multiplatform virtual machine allow for program-driven access from user desktop. …”
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    NGSmethDB 2017: enhanced methylomes and differential methylation
  5. 4465
    “…Reads were assembled into unigenes and annotated by sequence similarity. Python scripts were written to find open reading frames (ORFs) from each unigene. …”
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    Bioinformatic prediction of G protein-coupled receptor encoding sequences from the transcriptome of the foreleg, including the Haller’s organ, of the cattle tick, Rhipicephalus australis
  6. 4466
    “…In the second step, MDS were coded by python language and matched with cosine similarity formula. …”
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    Person centered prediction of survival in population based screening program by an intelligent clinical decision support system
  7. 4467
    “…RESULTS: We present an updated version of the popular Python program StrAuto, to streamline population structure analysis using parallel computing. …”
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    StrAuto: automation and parallelization of STRUCTURE analysis
  8. 4468
    “…Availability: DRACO-STEM is supplied as a package of the open-source multi-platform plant modeling library OpenAlea (http://openalea.github.io/) implemented in Python, and is freely distributed on GitHub (https://github.com/VirtualPlants/draco-stem) along with guidelines for installation and use.…”
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    DRACO-STEM: An Automatic Tool to Generate High-Quality 3D Meshes of Shoot Apical Meristem Tissue at Cell Resolution
  9. 4469
    “…An automated, high throughput, image analysis pipeline with customisable outputs was created using Imaris software coupled with Python and R scripts; this allowed non-subjective identification of nuclear foci, nuclei and cells. …”
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    Development of a pipeline for automated, high-throughput analysis of paraspeckle proteins reveals specific roles for importin α proteins
  10. 4470
    “…The core database engine, SnoVault (which is completely independent of ENCODE, genomic data, or bioinformatic data) has been released as a separate Python package.…”
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    SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata
  11. 4471
    “…HirBin is implemented as a Python package and is freely available for download at http://bioinformatics.math.chalmers.se/hirbin. …”
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    HirBin: high-resolution identification of differentially abundant functions in metagenomes
  12. 4472
    por Yin, Changchuan, Yau, Stephen S. -T.
    Publicado 2017
    “…Since our method can reduce false positive and increase the specificity of PPI prediction, it offers an effective tool to understand mechanisms of disease pathogens and find potential targets for drug design. The Python programs in this study are available to public at URL (https://github.com/cyinbox/PPI).…”
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    A coevolution analysis for identifying protein-protein interactions by Fourier transform
  13. 4473
    “…COMSOL, MATLAB, FSL, NEURON, Python) enables the creation and visualization of a DBS PAM. …”
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    Creating and parameterizing patient-specific deep brain stimulation pathway-activation models using the hyperdirect pathway as an example
  14. 4474
    “…UROPA is implemented in Python and R.…”
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    UROPA: a tool for Universal RObust Peak Annotation
  15. 4475
    “…Therefore, we introduce a python (2.7) based package, PyLDM, to address this need. …”
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    PyLDM - An open source package for lifetime density analysis of time-resolved spectroscopic data
  16. 4476
    “…CONCLUSION: The SLMSuite contains an R library with the segmentation methods and three wrappers that allow to use them in Python, Ruby and C++. SLMSuite is freely available at https://sourceforge.net/projects/slmsuite. …”
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    SLMSuite: a suite of algorithms for segmenting genomic profiles
  17. 4477
    Publicado 2017
    “…The database is suited to investigations of global and regional temperature variability over the Common Era, and is shared in the Linked Paleo Data (LiPD) format, including serializations in Matlab, R and Python.…”
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    A global multiproxy database for temperature reconstructions of the Common Era
  18. 4478
    “…NanoSim is written in Python and R. The source files and manual are available at the Genome Sciences Centre website: http://www.bcgsc.ca/platform/bioinfo/software/nanosim. …”
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    NanoSim: nanopore sequence read simulator based on statistical characterization
  19. 4479
    “…Electrical mapping showed that hearts of Anolis lizards and Python snakes were driven from the sinuatrial junction. …”
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    Morpho-functional characterization of the systemic venous pole of the reptile heart
  20. 4480
    “…In addition, a collection of Jupyter notebooks is publicly available as a complement to the material covered in this paper, providing code examples and tutorials for predictive modeling in python. The aim is to provide a practical understanding of predictive modeling of human brain data and to propose best-practices in conducting these analyses.…”
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    Encoding and Decoding Models in Cognitive Electrophysiology
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