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  1. 4481
  2. 4482
  3. 4483
    “…The nucmer aligner in MUMmer4 can now be called from scripting languages such as Perl, Python and Ruby. These improvements make MUMer4 one the most versatile genome alignment packages available.…”
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  4. 4484
    por Guenole, Nigel
    Publicado 2018
    “…All Mplus input and output files, R, and short Python scripts used to execute this simulation study are uploaded to an open access repository.…”
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  5. 4485
    “…AVAILABILITY AND IMPLEMENTATION: The web server is freely available at http://beam.uniroma2.it/ and it is implemented in NodeJS and Python with all major browsers supported. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
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  6. 4486
    “…AVAILABILITY AND IMPLEMENTATION: The tool is freely available at asap.epfl.ch and R/Python scripts are available at github.com/DeplanckeLab/ASAP. …”
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  7. 4487
    “…Here we report a set of Python packages that can automatically generate ISA-Tab metadata file stubs from raw XML metabolomics data files. …”
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  8. 4488
    “…The package also includes the raw database file (mysql dump), thereby providing a stand-alone downloadable framework for public use and integration with other tools. In addition, the Python code needed to recreate the database on another system is also publicly available (https://github.com/Mathelab/RaMP-BackEnd). …”
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  9. 4489
    “…While large genome centers or genome groups have developed software tools for post-annotation assembly filtering, annotation, and conversion into the NCBI’s annotation table format, these tools typically require back-end setup and connection to an Structured Query Language (SQL) database and/or some knowledge of programming (Perl, Python) to implement. With WGS becoming commonplace, genome sequencing projects are moving away from the genome centers and into the ecology or biology lab, where fewer resources are present to support the process of genome assembly curation. …”
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  10. 4490
  11. 4491
    “…AVAILABILITY AND IMPLEMENTATION: Spline transformation is implemented as a Keras layer in the CONCISE python package: https://github.com/gagneurlab/concise. …”
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  12. 4492
    “…Availability and implementation: FoCuS-point is written in python and is available through the github repository: https://github.com/dwaithe/FCS_point_correlator. …”
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  13. 4493
  14. 4494
  15. 4495
    “…The dataset, along with python source code for file input and signal processing, is made freely available at the Open Science Framework through the link https://osf.io/chav7/.…”
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  16. 4496
    “…More tools will be included in the future. We developed a Python interface for each of these tools to offer a seamless integration in the Jupyter web interface and ease the chaining of complementary analyses.…”
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  17. 4497
    “…The ADMETlab web platform is designed based on the Django framework in Python, and is freely accessible at http://admet.scbdd.com/. …”
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  18. 4498
    “…AVAILABILITY AND IMPLEMENTATION: HyPPO is a modular framework with a core developed in Python and is provided with a variety of C++ modules. …”
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  19. 4499
    “…The morphological analysis, visualization and surface meshing are implemented as an extensible Python API (Application Programming Interface) based on Blender, and the volume reconstruction and analysis code is written in C++ and parallelized using OpenMP. …”
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  20. 4500
    “…AVAILABILITY AND IMPLEMENTATION: The Bayesian data fusion method is implemented as a Python/C++ package: https://github.com/jaak-s/macau. …”
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