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  1. 4541
    “…BAMSE software is implemented in Python and is available open source under GNU GLPv3 at https://github.com/HoseinT/BAMSE.…”
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    BAMSE: Bayesian model selection for tumor phylogeny inference among multiple samples
  2. 4542
    “…A convolutional neural network (CNN) was developed with the python programming language. The CNN was trained with the Training dataset; performance was assayed concurrently with the Testing dataset. …”
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    Performance of A Convolutional Neural Network in Screening Liquid Based Cervical Cytology Smears
  3. 4543
    “…Ektacytometry reveals a markedly decreased deformability, whereas correlative light microscopy/scanning electron microscopy and python‐based skeleton analysis (Skan) reveal modifications to the surface of infected RBCs that underpin these physical changes. …”
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    Multimodal analysis of Plasmodium knowlesi‐infected erythrocytes reveals large invaginations, swelling of the host cell, and rheological defects
  4. 4544
    “…The complete software for data acquisition and stimulus presentation is written in Python 3.6 and is provided as an Anaconda package. …”
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    Open(G)PIAS: An Open-Source Solution for the Construction of a High-Precision Acoustic Startle Response Setup for Tinnitus Screening and Threshold Estimation in Rodents
  5. 4545
    “…This process was automated with a codebase written in Python. RESULTS: Analyses using a single weekly timepoint of 97 368 total products in March 2018 identified 2699 ready meals and pizzas, and showed that lower price ready meals had significantly lower levels of fat, saturates, sugar and salt (p<0.001). …”
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    Nutrient composition databases in the age of big data: foodDB, a comprehensive, real-time database infrastructure
  6. 4546
    “…In‐house code for evaluating IG with a fixed ΔD of 3% was developed using Python (v3.5.2) and investigated using treatment plans and measurement data from 25 retrospective patient specific quality assurance tests (53 individual arcs). …”
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    Technical note: A modified gamma evaluation method for dose distribution comparisons
  7. 4547
    “…Workshops with scOrange can proceed much faster than similar training methods that rely on computer programming and analysis through scripting in R or Python, allowing the trainer to cover more ground in the same time-frame. …”
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    scOrange—a tool for hands-on training of concepts from single-cell data analytics
  8. 4548
    “…AVAILABILITY AND IMPLEMENTATION: A Python/Answer Set Programming implementation can be accessed at github.com/GrossTor/response-logic. …”
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    Robust network inference using response logic
  9. 4549
    “…METHODS: Breast cancer prevention articles posted on a Chinese mobile-based social media platform (ie, WeChat Subscription Account [WeChat SA]) from January 1 to December 31, 2017, were extracted using the Python Web Crawler. We used content analysis and analysis of covariance to analyze our data. …”
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    Using the Extended Parallel Process Model to Examine the Nature and Impact of Breast Cancer Prevention Information on Mobile-Based Social Media: Content Analysis
  10. 4550
    “…Here we overcome this limitation by introducing MMHelper (10.5281/zenodo.3254394), a publicly available custom software implemented in Python which allows the automated analysis of brightfield or phase contrast, and any associated fluorescence, images of bacteria confined in the mother machine. …”
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    MMHelper: An automated framework for the analysis of microscopy images acquired with the mother machine
  11. 4551
    “…The Inception V3, Resnet, and Xception convolutional neural networks were constructed utilizing the Python programming language with Tensorflow as the framework. …”
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    Ankle Fracture Detection Utilizing a Convolutional Neural Network Ensemble Implemented with a Small Sample, De Novo Training, and Multiview Incorporation
  12. 4552
    “…Results: Twelve morphological features were automatically extracted from PyRadiomics implemented in Python. The rupture risks were higher in bifurcation aneurysms (P < 0.01), and morphological features Elongation and Flatness were much lower in ruptured bifurcation than sidewall aneurysms (P = 0.036, 0.011, respectively). …”
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    Bifurcation Configuration Is an Independent Risk Factor for Aneurysm Rupture Irrespective of Location
  13. 4553
    “…A prototype archiving system called PDB-Dev (https://pdb-dev.wwpdb.org) has also been created to archive integrative structural models, together with a Python library to facilitate handling of integrative models in PDBx/mmCIF format.…”
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    Archiving and disseminating integrative structure models
  14. 4554
    “…CONCLUSIONS: DrugZ is an open-source Python software for the analysis of genome-scale drug modifier screens. …”
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    Identifying chemogenetic interactions from CRISPR screens with drugZ
  15. 4555
    “…The new automation feature enables users to programmatically execute the app’s functionality in Cytoscape (command line tool) and with external tools (e.g. R, Jupyter, Python, etc). This allows users to share their analysis workflows and therefore increase repeatability and reproducibility. …”
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    CyTargetLinker app update: A flexible solution for network extension in Cytoscape
  16. 4556
    “…We present an open-source WMPL tool, implemented in the package Diffusion Imaging in Python (DIPY), and code to convert the resulting WMPL map to anisotropic contours for RT in a commercial treatment planning system. …”
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    An Open-Source Tool for Anisotropic Radiation Therapy Planning in Neuro-oncology Using DW-MRI Tractography
  17. 4557
    “…AVAILABILITY AND IMPLEMENTATION: LCV is available as a python script in GitHub (https://github.com/eyalsim/LCV). …”
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    Large-scale analysis of human gene expression variability associates highly variable drug targets with lower drug effectiveness and safety
  18. 4558
    “…BioBB’s are built as Python wrappers to provide an interoperable architecture. …”
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    BioExcel Building Blocks, a software library for interoperable biomolecular simulation workflows
  19. 4559
    “…CCBGpipe implemented in Python is available at https://github.com/jade-nhri/CCBGpipe. …”
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    Completing Circular Bacterial Genomes With Assembly Complexity by Using a Sampling Strategy From a Single MinION Run With Barcoding
  20. 4560
    por Weilguny, Lukas, Kofler, Robert
    Publicado 2019
    “…DeviaTE is implemented in Python and distributed under the GPLv3 (https://github.com/W-L/deviaTE).…”
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    DeviaTE: Assembly‐free analysis and visualization of mobile genetic element composition
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