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  1. 4561
    “…AVAILABILITY AND IMPLEMENTATION: The Python SimKern software, the demonstration models (in MATLAB, R), and the datasets are available at https://github.com/davidcraft/SimKern. …”
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    Simulation-assisted machine learning
  2. 4562
    “…IMPLEMENTATION: Tangle is implemented in Python using Keras and it is hosted on GitHub at https://github.com/samuelefiorini/tangle.…”
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    Predicting diabetes second-line therapy initiation in the Australian population via time span-guided neural attention network
  3. 4563
    “…Our open-source classifier is implemented in Python and can be used to scan homologs of the RcGTA genes in newly sequenced genomes. …”
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    Machine-Learning Classification Suggests That Many Alphaproteobacterial Prophages May Instead Be Gene Transfer Agents
  4. 4564
    “…The approach is tested on simulators iFogSim (Net-Beans) and Spyder (Python). The obtained results indicated the better performance of the proposed approach compared with existing methods.…”
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    An analytical model to minimize the latency in healthcare internet-of-things in fog computing environment
  5. 4565
    “…AVAILABILITY AND IMPLEMENTATION: scMatch (Python code) and the FANTOM5 reference dataset are freely available to the research community here https://github.com/forrest-lab/scMatch. …”
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    scMatch: a single-cell gene expression profile annotation tool using reference datasets
  6. 4566
    por Finkle, Justin D, Bagheri, Neda
    Publicado 2019
    “…We present a hybrid approach, termed Differential Expression in Python (DiffExPy), that uniquely combines discrete, differential expression analysis with in silico differential equation simulations to yield accurate, quantitative predictions of gene expression from time-series data. …”
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    Hybrid analysis of gene dynamics predicts context-specific expression and offers regulatory insights
  7. 4567
    “…RBV is a CNV validation and prioritisation bioinformatic tool for both genome and exome sequencing available as a python package from https://github.com/whitneywhitford/RBV.…”
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    RBV: Read balance validator, a tool for prioritising copy number variations in germline conditions
  8. 4568
    “…Such transcriptional differences are used to automatically identify distinct and shared gene programs among cell-types and identify impacted pathways and transcriptional regulatory networks to understand the impact of perturbations at a systems level. cellHarmony is implemented as a python package and as an integrated workflow within the software AltAnalyze. …”
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    cellHarmony: cell-level matching and holistic comparison of single-cell transcriptomes
  9. 4569
    “…ANN-SoLo is implemented in Python and C++. It is freely available under the Apache 2.0 license at https://github.com/bittremieux/ANN-SoLo.…”
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    Extremely fast and accurate open modification spectral library searching of high-resolution mass spectra using feature hashing and graphics processing units
  10. 4570
    “…PhySpeTree is implemented in Python running on modern operating systems (Linux, macOS, and Windows). …”
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    PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees
  11. 4571
    “…AIM: 'This study aims to establish an open-source algorithm using Python to analyze the accuracy of guided implantation, which simplifies interstudy comparisons. …”
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    Use of three points to determine the accuracy of guided implantation
  12. 4572
    por Wist, Julien
    Publicado 2019
    “…The approach described in this manuscript can be extended to connect the interface to other scripting languages such as Python, and to create interfaces for other types of data analysis.…”
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    HastaLaVista, a web-based user interface for NMR-based untargeted metabolic profiling analysis in biomedical sciences: towards a new publication standard
  13. 4573
    “…Here, we test the use of a mix of universal and specific markers, provide criteria to integrate multi‐marker metabarcoding data and a python script to implement such criteria and produce a single list of taxa ingested per sample. …”
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    Advancing the integration of multi‐marker metabarcoding data in dietary analysis of trophic generalists
  14. 4574
    por Tremblay, Julien, Yergeau, Etienne
    Publicado 2019
    “…RESULTS: Here we describe AmpliconTagger, a short rRNA marker gene amplicon pipeline coded in a Python framework that enables fine tuning and integration of virtually any potential rRNA gene amplicon bioinformatic procedure. …”
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    Systematic processing of ribosomal RNA gene amplicon sequencing data
  15. 4575
    “…The Arteria Project code, written largely in Python, is available as open source software, and more information can be found at https://arteria-project.github.io/ . …”
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    Arteria: An automation system for a sequencing core facility
  16. 4576
    “…SimSpliceEvol was implemented in Python. The source code is freely available at https://github.com/UdeS-CoBIUS/SimSpliceEvol. …”
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    SimSpliceEvol: alternative splicing-aware simulation of biological sequence evolution
  17. 4577
    “…Here we present an open-source and platform independent set of behavior analysis pipelines using interactive Python that researchers with no prior programming experience can use. …”
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    ezTrack: An open-source video analysis pipeline for the investigation of animal behavior
  18. 4578
    “…Secondly, we have inquired into how the incorporation of statistical potential terms (such as the DOPE potential) in the MODELLER’s objective function impacts positively 3D modeling quality by providing a small but consistent improvement in metrics such as GDT-HA and lDDT and a large increase in stereochemical quality. Python modules to harness this second strategy are freely available at https://github.com/pymodproject/altmod. …”
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    Revisiting the “satisfaction of spatial restraints” approach of MODELLER for protein homology modeling
  19. 4579
    “…MATERIALS AND METHODS: We developed the server-side system components in Python, connected them to a PostgreSQL database, and implemented the web-based user interface using Javascript, HTML, and CSS. …”
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    Trial2rev: Combining machine learning and crowd-sourcing to create a shared space for updating systematic reviews
  20. 4580
    “…“Brian” is a popular Python-based simulator for spiking neural networks, commonly used in computational neuroscience. …”
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    Brian2GeNN: accelerating spiking neural network simulations with graphics hardware
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