“…Length distribution of sequencing reads were assessed and statistics of data were plotted by the ReadStat.4 python script. The datasets can be used to profile the transcriptomic landscape of RNA viruses, provide information for novel gene annotations, can serve as resource for studying the virus-host interactions, and for the analysis of RNA base modifications. …”
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“…The collected data require analysis (i.e., mining, neural networks, Bayesian networks, and other ML algorithms) before data visualization using Python, R, Circos, Gephi, Tableau, or Cytoscape. Approximately 122 models, all of which were used in FS studies worldwide, were selected from 130 articles. …”
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“…The user-friendly web server is accessible at ikcrcnn.webmalab.cn/, and the involved Python scripts can be conveniently downloaded at github.com/lijundou/iKcr_CNN/. …”
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“…We have also expanded the capabilities of BioUML for data analysis and visualization of biomedical data: (i) any programs and Jupyter kernels can be plugged into the BioUML platform using Docker technology; (ii) BioUML is integrated with the Galaxy and Galaxy Tool Shed; (iii) BioUML provides two-way integration with R and Python (Jupyter notebooks): scripts can be executed on the BioUML web pages, and BioUML functions can be called from scripts; (iv) using plug-in architecture, specialized viewers and editors can be added. …”
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“…. • The simulation model integrates MODFLOW and MODPATH to simulate 3D groundwater flow and advective contaminant movement, respectively and is transferred via FloPy to couple with the optimization/decision model using a custom Python script.…”
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“…Here, we have developed a Python package designed for integrated analysis of cells and ECM in a spatially dependent manner. …”
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“…Here, we report CyberSco.Py, Python software for advanced automated timelapse experiments. …”
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“…We use non-negative matrix factorization (NMF) decomposition in scikit-learn, an open-source, python language “machine learning” package, to extract spectral components and derive weighting factors. …”
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“…Machine/deep learning algorithms were performed using Python language (v3.7.6) on PyCharm platform. RESULTS: Of 11308 students enrolled, there are 5527 girls, and 408 of them had experienced precocious puberty. …”
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“…The implementation tool used is PYTHON and the dataset used for the analysis are Grocery datasets (Freiburg Groceries and Grocery Store Dataset). …”
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“…To better capture fear-related behavioral repertoires in our animals, we developed ScaredyRat, an open-source custom Python tool that analyzes Noldus Ethovision-generated raw data files to identify darters and quantify both conditioned and unconditioned responses. …”
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“…We suggest that this feature can be used to predict ORFs and develop the Python package ‘OrfPP’, which recovers ~83% of the annotated ORFs in the tested genomes on average, independent of the population sizes and the complexity of the genomes. …”
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“…We implemented an established trust-region method as a modular Python framework (fides) to enable systematic comparison of different approaches to ODE model calibration involving a variety of Hessian approximation schemes. …”
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“…The method is available in a Python function for easy and parameter-free implementation.…”
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“…We share a ready to use R and Python codes which allow: (a) read raw European Data Format files, (b) read data files containing the seizure annotations made by human experts, (c) extract train, validation and test data, (d) create an appropriate Convolutional Neural Network (CNN) model, (e) train the model, (f) check the quality of the neural classifier, (g) save all learning results.…”
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“…We developed an open source software package called Fire Event Delineation for python (FIREDpy) which automatically downloads and processes all of the source files for an area of interest from the MODIS burned area product, and runs a spatiotemporal flooding algorithm that converts those hundreds of grids into a single fire perimeter shapefile. …”
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“…METHODS: In January 2021, publications indexed in PubMed under the Medical Subject Headings (MeSH) term ‘Bariatric Surgery’ from 1946 to 2020 were downloaded. Python was used to extract publication dates, abstracts, and research topics from the metadata of publications for bibliometric evaluation. …”
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“…To fill the gap, this paper uses Python to measure the LSM between 69,463 posts from 9,777 users and existing firms’ generated content in the MIUI community and examines the impact of firms’ feedbacks on this LSM. …”
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“…Herein we present Scarf, a modularly designed Python package that seamlessly interoperates with other single-cell toolkits and allows for memory-efficient single-cell analysis of millions of cells on a laptop or low-cost devices like single-board computers. …”
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“…Combining qualitative (study 1 extracted 1907 rumors from top rumor-refuting websites using the Python Web Crawler and conducted content analysis) and quantitative (study 2 conducted an online survey adopting a three-wave design, N = 444) research methods, the current study revealed that government-related rumors accounted for the largest proportion of rumors during the outbreak stage of the pandemic and were positively associated with the public’s negative emotions. …”
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