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  1. 4981
    “…CONCLUSIONS: These new methods will allow microhaplotype panels to be designed using low-coverage WGS and pool-seq data to discover and evaluate candidate loci. The python script implementing the two methods and documentation are available at https://www.github.com/delomast/mhFromLowDepSeq. …”
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    Estimating microhaplotype allele frequencies from low-coverage or pooled sequencing data
  2. 4982
    “…Two experienced sonographers delineated the TG and TN regions, and USR features were extracted using Python. Lasso regression and logistic analysis were employed to select relevant USR features and clinical data to construct the model for differentiating benign and malignant TN. …”
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    Radiomics-based ultrasound models for thyroid nodule differentiation in Hashimoto’s thyroiditis
  3. 4983
    “…Based on our results, Python was the most frequent programming language used for implementing the proposed methods in the investigated papers. …”
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    Medical image analysis using deep learning algorithms
  4. 4984
    “…In summary, Slim-TPCA is an efficient strategy for characterization of protein complexes at scale across cellular conditions, and is available as Python package at https://pypi.org/project/Slim-TPCA/.…”
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    Improved in situ characterization of protein complex dynamics at scale with thermal proximity co-aggregation
  5. 4985
    “…BestmiRNorm, developed utilizing the Python programming language, enables the assessment of up to 11 potential normalizers. …”
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    Optimized RT-qPCR and a novel normalization method for validating circulating miRNA biomarkers in ageing-related diseases
  6. 4986
    “…METHODS: To address this issue, we introduce the Search-based Geographic Metadata Curation (SGMC) pipeline. SGMC utilized Python and web scraping to extract geographic data of sequencing institutions from NCBI SRA in the Cloud and its website. …”
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    A search-based geographic metadata curation pipeline to refine sequencing institution information and support public health
  7. 4987
    por Lee, Miler T., Kim, Junhyong
    Publicado 2008
    “…Analysis of self containment will be important for both annotation and design of functional RNAs. A Python implementation and Web interface to calculate the self-containment index are available at http://kim.bio.upenn.edu/software/.…”
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    Self Containment, a Property of Modular RNA Structures, Distinguishes microRNAs
  8. 4988
    “…The application has been developed in Python and is designed to be easily extensible by groups interested in adding new or extending existing features. …”
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    Rapidly exploring structural and dynamic properties of signaling networks using PathwayOracle
  9. 4989
    “…Availability: Our contact replacement algorithm is implemented in platform-independent Python code. The software can be freely obtained for academic use by request from the authors. …”
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    Contact replacement for NMR resonance assignment
  10. 4990
    “…Further the five best-docked complexes were analyzed through Python Molecular Viewer software for their interaction studies. …”
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    A ClpP protein model as tuberculosis target for screening marine compounds
  11. 4991
    “…A custom program written in Python was used to determine single nucleotide polymorphisms which were confirmed by PCR product Sanger sequencing. …”
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    Use of Whole Genome Sequencing to Determine the Microevolution of Mycobacterium tuberculosis during an Outbreak
  12. 4992
    por Li, Yi, Xie, Xiaohui
    Publicado 2013
    “…Currently, TEMT only resolves the tissue heterogeneity resulting from two cell types, but it can be extended to handle tissue heterogeneity resulting from multi cell types. TEMT is written in python, and is freely available at https://github.com/uci-cbcl/TEMT. …”
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    A mixture model for expression deconvolution from RNA-seq in heterogeneous tissues
  13. 4993
    “…Point primitives are manually marked on a 2D illustration of an anchor on a Cartesian graph paper and a set of Cartesian coordinates for each point primitive is manually extracted from the graph paper. A Python script is then written in Blender to construct 3D rectangular building blocks based on the Cartesian coordinates. …”
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    A Deformable Generic 3D Model of Haptoral Anchor of Monogenean
  14. 4994
    “…NMR kinetic data were subsequently processed using a custom software module written in the Python programming language, and globally fitted to appropriately modified Hill equations.…”
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    Determining Enzyme Kinetics for Systems Biology with Nuclear Magnetic Resonance Spectroscopy
  15. 4995
    “…Diffusion Imaging in Python (Dipy) is a free and open source software project for the analysis of data from diffusion magnetic resonance imaging (dMRI) experiments. dMRI is an application of MRI that can be used to measure structural features of brain white matter. …”
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    Dipy, a library for the analysis of diffusion MRI data
  16. 4996
    “…The source code for the SnowyOwl pipeline (in Python) and a web interface (in PHP) is freely available from http://sourceforge.net/projects/snowyowl/.…”
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    SnowyOwl: accurate prediction of fungal genes by using RNA-Seq and homology information to select among ab initio models
  17. 4997
    “…In response to this challenge, we have created Pydpiper, a neuroimaging registration toolkit written in Python. Pydpiper is an open-source, freely available software package that provides multiple modules for various image registration applications. …”
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    Pydpiper: a flexible toolkit for constructing novel registration pipelines
  18. 4998
    “…We present VISual Plotting Interface for Genetics (visPIG; http://vispig.icr.ac.uk), a web application to produce multi-track, multi-scale, multi-region plots of genetic data. visPIG has been designed to allow users not well versed with mathematical software packages and/or programming languages such as R [1], Matlab®, Python, etc., to integrate data from multiple sources for interpretation and to easily create publication-ready figures. …”
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    visPIG - A Web Tool for Producing Multi-Region, Multi-Track, Multi-Scale Plots of Genetic Data
  19. 4999
    “…ADTEx is implemented as a user friendly software package using Python and R statistical language. Source code and sample data are freely available under GNU license (GPLv3) at http://adtex.sourceforge.net/. …”
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    Inferring copy number and genotype in tumour exome data
  20. 5000
    “…We show how LEMS, together with the open source Java and Python based libraries we have developed, facilitates the generation of scripts for multiple neuronal simulators and provides a route for simulator free code generation. …”
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    LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2
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