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  1. 5101
    “…Taken together, DeconPeaker as a powerful tool has the potential to combine different datasets (primarily, chromatin accessibility and gene expression) and define different cell types in mixtures. The Python package of DeconPeaker is now available at https://github.com/lihuamei/DeconPeaker.…”
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    DeconPeaker, a Deconvolution Model to Identify Cell Types Based on Chromatin Accessibility in ATAC-Seq Data of Mixture Samples
  2. 5102
    “…Splice2Deep models are implemented in Python using Keras API; the models and the data are available at https://github.com/SomayahAlbaradei/Splice_Deep.git.…”
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    Splice2Deep: An ensemble of deep convolutional neural networks for improved splice site prediction in genomic DNA
  3. 5103
    “…METHODS: A machine learning algorithm was developed in Scikit-learn, a Python module. The study population, selected from the 2014 Truven MarketScan® Commercial Claims Database, consisted of patients with EPI-prone conditions. …”
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    Applying Machine Learning Techniques to Identify Undiagnosed Patients with Exocrine Pancreatic Insufficiency
  4. 5104
    “…The decision tree, support vector machine, naive Bayes, logistic regression, random forest, and K-nearest neighbor algorithms were applied directly on the dataset using python programming language to develop the models. …”
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    Predictive Data Mining Models for Novel Coronavirus (COVID-19) Infected Patients’ Recovery
  5. 5105
    “…The manual operation time in APs was 83.21% less than that in MPs, and the computer processing time was 34.22% more. CONCLUSION: IronPython language designed by RayStation TPS has clinical application value in the design of automatic radiotherapy plan for nasopharyngeal carcinoma. …”
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    Automatic Planning for Nasopharyngeal Carcinoma Based on Progressive Optimization in RayStation Treatment Planning System
  6. 5106
    “…The COVID-ABS model was implemented in Python programming language, with source code publicly available. …”
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    COVID-ABS: An agent-based model of COVID-19 epidemic to simulate health and economic effects of social distancing interventions
  7. 5107
    “…These promising results support that the proposed framework could be applied in future genetic studies to identify disease causing loci involving the splicing mechanism. The datasets and Python scripts used in this study are available on the GitHub repository at https://github.com/smiile8888/rna-splice-sites-recognition.…”
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    Predicting the effect of variants on splicing using Convolutional Neural Networks
  8. 5108
    “…AVAILABILITY AND IMPLEMENTATION: We make our code publicly available as an easy-to-use Python package under https://github.com/BorgwardtLab/maldi_PIKE.…”
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    Topological and kernel-based microbial phenotype prediction from MALDI-TOF mass spectra
  9. 5109
    “…The morphology analysis, visualization, meshing and rendering modules are implemented as an add-on for Blender 2.8 based on its Python API (application programming interface). The add-on functionality is made available to users through an intuitive graphical user interface, as well as through exhaustive configuration files calling the API via a feature-rich command line interface running Blender in background mode. …”
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    Interactive visualization and analysis of morphological skeletons of brain vasculature networks with VessMorphoVis
  10. 5110
    “…Here we present Janggu, a python library facilitates deep learning for genomics applications, aiming to ease data acquisition and model evaluation. …”
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    Deep learning for genomics using Janggu
  11. 5111
    “…Countries that introduced various mitigation measures had experienced control in transmission of COVID-19. Python programming is conducted for change point analysis (CPA) using Bayesian probability approach for understanding the impact of restrictions and mitigation methods in terms of either increase or stagnation in number of COVID-19 cases for eight countries. …”
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    Understanding COVID-19 transmission, health impacts and mitigation: timely social distancing is the key
  12. 5112
    por Pan, Wenjing, Feng, Bo, Shen, Cuihua
    Publicado 2020
    “…METHODS: A total of 2061 users and their 62,274 replies posted on a depression forum from July 2004 to July 2014 were extracted using a web crawler written in Python. The content of the forum users’ posts and replies and their reply patterns were examined. …”
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    Examining Social Capital, Social Support, and Language Use in an Online Depression Forum: Social Network and Content Analysis
  13. 5113
    “…CONCLUSIONS: MutEnricher is a flexible software package for investigating somatic mutation enrichment that is implemented in Python, is freely available, can be efficiently parallelized, and is highly configurable to researcher's specific needs. …”
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    MutEnricher: a flexible toolset for somatic mutation enrichment analysis of tumor whole genomes
  14. 5114
    “…It was programmed with Python and used NumPy, pandas, and scikit-learning modules. …”
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    FeAture Explorer (FAE): A tool for developing and comparing radiomics models
  15. 5115
    “…This resource is available as a well-documented python library with a simple command-line interface. …”
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    A community-maintained standard library of population genetic models
  16. 5116
    “…Finally, we open source our Python code at https://github.com/yxchspring/MIAS in order to share our tool with the research community.…”
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    Mammographic image classification with deep fusion learning
  17. 5117
    “…We provide the datasets and step-by-step tutorial analysis scripts written in Python, allowing for descriptions of the event-related potentials, spectrograms, and the topography of power. …”
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    High-density EEG of auditory steady-state responses during stimulation of basal forebrain parvalbumin neurons
  18. 5118
    “…The second tool, called “search_nwb” is written in Python and also allow searching the complete contents of NWB files. …”
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    NWB Query Engines: Tools to Search Data Stored in Neurodata Without Borders Format
  19. 5119
    “…CONCLUSIONS: AllCoPol is a Python package for phylogenetic reconstructions of polyploids offering enhanced functionality as well as improved usability. …”
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    AllCoPol: inferring allele co-ancestry in polyploids
  20. 5120
    “…AVAILABILITY AND IMPLEMENTATION: The present tool is available online: https://lifeware.inria.fr/∼soliman/post/casq/ and distributed as a Python package under the GNU GPLv3 license. The code can be accessed here: https://gitlab.inria.fr/soliman/casq. …”
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    Automated inference of Boolean models from molecular interaction maps using CaSQ
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