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  1. 5121
    “…To characterize changes in the organization of synaptic nanodomains during synaptic plasticity over a large population of synapses, we combined STimulated Emission Depletion (STED) nanoscopy with a Python-based statistical object distance analysis (pySODA), in dissociated cultured hippocampal circuits exposed to treatments driving different forms of synaptic plasticity. …”
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    Activity-Dependent Remodeling of Synaptic Protein Organization Revealed by High Throughput Analysis of STED Nanoscopy Images
  2. 5122
    “…ANSH is supported by a JAVA-based workflow environment and python providing a simple, dynamic, and distributed platform with data security. …”
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    ANSH: Multimodal Neuroimaging Database Including MR Spectroscopic Data From Each Continent to Advance Alzheimer’s Disease Research
  3. 5123
    “…We next develop an iterative co-design process for the systematic design of more hardware-friendly CNNs whilst considering hardware constraints, such as core sizes. A python wrapper, developed for the mapping process, is also useful for validating hardware design and studies on traffic volume and energy consumption. …”
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    HFNet: A CNN Architecture Co-designed for Neuromorphic Hardware With a Crossbar Array of Synapses
  4. 5124
    “…Finally, 75% of the analyzed studies implement machine learning-based models using Python. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10916-020-01669-5.…”
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    Suicide Risk Assessment Using Machine Learning and Social Networks: a Scoping Review
  5. 5125
    “…A comprehensive search of the electronic medical records was performed using a proprietary python script to identify any mention of QT prolongation, ventricular tachy-arrhythmias and cardiac arrest. …”
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    Safely Administering Potential QTc Prolonging Therapy Across a Large Health Care System in the COVID-19 Era
  6. 5126
    “…We collected data from Twitter (https://twitter.com/), a major social media platform in Korea and Japan. Python 3.7 Library was used for data collection. Data analysis included KR-WordRank and frequency analyses in Korea and Japan, respectively. …”
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    Determining Public Opinion of the COVID-19 Pandemic in South Korea and Japan: Social Network Mining on Twitter
  7. 5127
    por Zhang, Bo, Zhou, Hongwei, Zhou, Fang
    Publicado 2020
    “…OBJECTIVE: To reconstruct the transmission trajectory of SARS-CoV-2 and analyze the effects of control measures in China. METHODS: Python 3.7.1 was used to write a SEIR class to model the epidemic procedure and proportional estimation method to estimate the initial true infected number. …”
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    Study on SARS-CoV-2 transmission and the effects of control measures in China
  8. 5128
    por Prince, Eric, Hankinson, Todd
    Publicado 2020
    “…METHODS: HD Spot is written in python and relies on Google’s TensorFlow2 deep learning framework. …”
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    TBIO-11. DEEP LEARNING-BASED SINGLE-CELL RNA SEQUENCING DIFFERENTIATION IDENTIFIES SIMPLE AND COMPLEX TRANSCRIPTIONAL NETWORKS FOR SUBPOPULATION CLASSIFICATION
  9. 5129
    “…We developed an open source Python package, Ventiliser, that includes a rule-based algorithm to automatically discretise ventilator data into a sequence of flow and pressure states and to recognise ventilator inflations and an information gain approach to identify inflation phases (inspiration, expiration) and sub-phases (pressure rise, pressure plateau, inspiratory hold etc.). …”
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    Computational analysis of neonatal ventilator waveforms and loops
  10. 5130
    “…Different methods are discussed to support each step, including their characteristics, directions for use, key references, and relevant R and Python packages. To address challenges regarding metamodeling methods selection, a first guide was developed toward using metamodels to reduce the computational burden of analyses of health economic models. …”
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    Introduction to Metamodeling for Reducing Computational Burden of Advanced Analyses with Health Economic Models: A Structured Overview of Metamodeling Methods in a 6-Step Application Process
  11. 5131
    “…Many projects of database or index federation fail to provide easier alternatives to access or query information. To this end, a Python API query system was developed to enhance the accessibility of FIVE.…”
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    NCBI’s Virus Discovery Codeathon: Building “FIVE” —The Federated Index of Viral Experiments API Index
  12. 5132
    “…The dataset was then collaboratively analysed using Panda's Library in Python software as an analysis tool for data preparation and for frequency analysis. …”
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    Comprehensive Analysis of Retracted Publications in Dentistry: A 23-Year Review
  13. 5133
    “…We present here MEArec, a Python-based software which permits flexible and fast simulation of extracellular recordings. …”
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    MEArec: A Fast and Customizable Testbench Simulator for Ground-truth Extracellular Spiking Activity
  14. 5134
    por Kim, Eiru, Hart, Traver
    Publicado 2021
    “…BAGEL2 is written in Python 3 and source code, along with all supporting files, are available on github (https://github.com/hart-lab/bagel).…”
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    Improved analysis of CRISPR fitness screens and reduced off-target effects with the BAGEL2 gene essentiality classifier
  15. 5135
    por Müller, Dominik, Kramer, Frank
    Publicado 2021
    “…Therefore, this paper introduces the open-source Python library MIScnn. IMPLEMENTATION: The aim of MIScnn is to provide an intuitive API allowing fast building of medical image segmentation pipelines including data I/O, preprocessing, data augmentation, patch-wise analysis, metrics, a library with state-of-the-art deep learning models and model utilization like training, prediction, as well as fully automatic evaluation (e.g. cross-validation). …”
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    MIScnn: a framework for medical image segmentation with convolutional neural networks and deep learning
  16. 5136
    “…The original MATLAB methods were reprogrammed in Python; efficient algorithms were developed to detect breaths, calculate normalized ventilation (moving time-average), and model ventilatory drive (intended ventilation). …”
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    A scalable method of determining physiological endotypes of sleep apnea from a polysomnographic sleep study
  17. 5137
    “…Most function indicators were significantly different between the mild to moderate and severely ill groups in diabetes patients (P < 0.05 or P < 0.01). Python analysis confirmed diabetes was the independent risk factor of COVID-19 progression in elderly patients. …”
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    Risk factors associated with the progression of COVID-19 in elderly diabetes patients
  18. 5138
    “…In this study, a novel method is proposed to calculate the trip distances and trajectories via a python package OSMnx so as to accurately estimate the environmental benefits of bike sharing. …”
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    Impacts of COVID-19 pandemic on user behaviors and environmental benefits of bike sharing: A big-data analysis
  19. 5139
    “…The algorithm is cross-platform compatible, implemented using the Python programming language, and readily available as free and open-source software from public sources.…”
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    REMoDNaV: robust eye-movement classification for dynamic stimulation
  20. 5140
    “…Packages implementing AQuN are provided for Python and Matlab: https://github.com/YakhiniGroup/PyAQN.…”
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    miRNA normalization enables joint analysis of several datasets to increase sensitivity and to reveal novel miRNAs differentially expressed in breast cancer
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