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  1. 5141
    “…Radiomics features were extracted from PET/CT images using Pyradiomics implemented in Python, and the XGBoost algorithm was used to build a prediction model. …”
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    Preoperative prediction of pathological grade in pancreatic ductal adenocarcinoma based on (18)F-FDG PET/CT radiomics
  2. 5142
    “…METHODS: For this study, we have used social media posts as data. Using Python, we have scrapped the social media posts of Indian citizens discussing about the COVID- 19 vaccine. …”
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    Analyzing the attitude of Indian citizens towards COVID-19 vaccine – A text analytics study
  3. 5143
    “…Here we present AXIOME3, which is a completely redeveloped AXIOME pipeline that streamlines small subunit ribosomal RNA data analysis by managing QIIME2, R, and Python-associated analyses through an interactive web interface. …”
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    AXIOME3: Automation, eXtension, and Integration Of Microbial Ecology
  4. 5144
    “…In addition, technical updates were deployed to facilitate maintainability of the package, which include porting the PRIMUS graphical interface to Qt5, updating SASpy – a PyMOL plugin to run a subset of ATSAS tools – to be both Python 2 and 3 compatible, and adding utilities to facilitate mmCIF compatibility in future ATSAS releases. …”
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    ATSAS 3.0: expanded functionality and new tools for small-angle scattering data analysis
  5. 5145
    por Kim, Yewon, Yeom, Yongjin
    Publicado 2021
    “…The NIST offers two programs for running the entropy estimation process of SP 800-90B, which are written in Python and C++. The running time for estimating the entropy is more than one hour for each noise source. …”
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    Accelerated implementation for testing IID assumption of NIST SP 800-90B using GPU
  6. 5146
    “…A mere two-step procedure with user-specified, text-based information and Python codes constructs FAA with nodes which can be combined or divided objectively while maintaining anatomical hierarchy of brain structures. …”
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    Flexible annotation atlas of the mouse brain: combining and dividing brain structures of the Allen Brain Atlas while maintaining anatomical hierarchy
  7. 5147
    “…Freecyto is a free and intuitive Python-flask-based web application that uses a weighted k-means clustering algorithm to facilitate the interactive analysis of flow cytometry data. …”
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    K-means quantization for a web-based open-source flow cytometry analysis platform
  8. 5148
    “…METHODS: This study is a secondary analysis of public database data from 578 liver cancer patients. We used Python for ML to establish the prognosis model. RESULTS: The results showed that the 5 most important factors were platelet count (PLT), Alpha-fetoprotein (AFP), age, tumor size, and total bilirubin, respectively. …”
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    Machine Learning Can Predict Total Death After Radiofrequency Ablation in Liver Cancer Patients
  9. 5149
    “…AVAILABILITY AND IMPLEMENTATION: SamCC-Turbo is available as a web server (https://lbs.cent.uw.edu.pl/samcc_turbo) and as a Python library (https://github.com/labstructbioinf/samcc_turbo), whereas the results of the Protein Data Bank scan can be browsed and downloaded at https://lbs.cent.uw.edu.pl/ccdb. …”
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    A library of coiled-coil domains: from regular bundles to peculiar twists
  10. 5150
    por Sonehara, Kyuto, Okada, Yukinori
    Publicado 2020
    “…AVAILABILITY AND IMPLEMENTATION: Obelisc is feely available at https://github.com/qsonehara/Obelisc as a python package with example datasets. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
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    Obelisc: an identical-by-descent mapping tool based on SNP streak
  11. 5151
    “…Availability: The ThermoScan server is freely accessible online at https://folding.biofold.org/thermoscan. The ThermoScan python code and the Google Chrome extension for submitting visualized PMC web pages to the ThermoScan server are available at https://github.com/biofold/ThermoScan.…”
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    ThermoScan: Semi-automatic Identification of Protein Stability Data From PubMed
  12. 5152
    “…Variants of MRS broth with ethanol (10–20%), glucose (2–25%), and fructose (2–24%) were prepared to test the strain’s growth preferences using Bioscreen C and the PYTHON script. L. hilgardii FLUB was found to be more resistant than a reference strain to high concentrations of alcohol (18%) and sugars (25%). …”
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    Genome and Pangenome Analysis of Lactobacillus hilgardii FLUB—A New Strain Isolated from Mead
  13. 5153
    “…One hundred and four human teeth were scanned on a high-resolution micro-CT scanner using an automatic specimen changer. Python code in a Jupyter notebook was used to verify and process the scans, prepare the datasets for description of the internal morphology and to measure the apical region of the tooth. …”
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    Automated segmentation and description of the internal morphology of human permanent teeth by means of micro-CT
  14. 5154
    por Alon, Uri, Mokryn, Osnat, Hershberg, Uri
    Publicado 2021
    “…We further identify a third branch of clonal patterns typical of the lymphatic organs (Spleen, MLN, and bone marrow) separated from the other two categories. We developed a python version of LPA analysis that can easily be applied to compare clonal distributions - https://github.com/ScanLab-ossi/LPA. …”
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    Using Domain Based Latent Personal Analysis of B Cell Clone Diversity Patterns to Identify Novel Relationships Between the B Cell Clone Populations in Different Tissues
  15. 5155
    “…Here we established a dynamic transmission model via Python and realized comprehensive regulation of disease control measures. …”
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    A prognostic dynamic model applicable to infectious diseases providing easily visualized guides: a case study of COVID-19 in the UK
  16. 5156
    “…NGScloud2 includes a companion package, NGShelper that contains Python utilities to post-process the output of the pipelines for downstream analysis at https://github.com/GGFHF/NGShelper.…”
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    NGScloud2: optimized bioinformatic analysis using Amazon Web Services
  17. 5157
    “…Recent enhancements include statistical, visualization, and deep learning capabilities through interfacing with both the R statistical project (ANTsR) and Python (ANTsPy). Additionally, the corresponding deep learning extensions ANTsRNet and ANTsPyNet (built on the popular TensorFlow/Keras libraries) contain several popular network architectures and trained models for specific applications. …”
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    The ANTsX ecosystem for quantitative biological and medical imaging
  18. 5158
    “…The program continues in the summer with a one-week, intensive Python and image processing workshop. From there, scholars tackle image analysis problems using a pair programming approach and can finish the summer with independent research. …”
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    Digital imaging and vision analysis in science project improves the self-efficacy and skill of undergraduate students in computational work
  19. 5159
    “…RESULTS: We present CLoNe, an original Python-based clustering scheme that builds on the Density Peaks algorithm of Rodriguez and Laio. …”
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    CLoNe: automated clustering based on local density neighborhoods for application to biomolecular structural ensembles
  20. 5160
    “…Coupled with a software developed in Python, the system is composed of a video logger and a global navigation satellite system. …”
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    Towards a Machine Vision-Based Yield Monitor for the Counting and Quality Mapping of Shallots
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