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  1. 5401
    “…In addition, we also introduce a tool that enables other researchers to use this approach for further research: QFlow lite—a Python-based mini-software suite that uses the dataset to train neural networks to recognize the state of a device and differentiate between states in experimental data. …”
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    QFlow lite dataset: A machine-learning approach to the charge states in quantum dot experiments
  2. 5402
    “…Recently, plugins to the Python-based Hierarchical ENvironment for Integrated Xtallography (PHENIX) crystallographic platform have been developed to augment conventional methods with the in situ use of quantum mechanics (QM) applied to ligand(s) along with the surrounding active site(s) at each step of refinement [Borbulevych et al. (2014 ▸), Acta Cryst D70, 1233–1247]. …”
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    High-throughput quantum-mechanics/molecular-mechanics (ONIOM) macromolecular crystallographic refinement with PHENIX/DivCon: the impact of mixed Hamiltonian methods on ligand and protein structure
  3. 5403
    “…LogLoss-BERAF is implemented as a standalone python code and open-source code is freely available from https://github.com/bioinformatics-IBCH/logloss-beraf along with the models described in this article.…”
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    LogLoss-BERAF: An ensemble-based machine learning model for constructing highly accurate diagnostic sets of methylation sites accounting for heterogeneity in prostate cancer
  4. 5404
    “…METHODS: A total of 2691 tweets related to 2 gynecologic cancers—breast cancer and cervical cancer—posted on Weibo from June 2015 to June 2016 were extracted using the Python Web Crawler. Two medical school graduate students with expertise in gynecologic diseases were recruited to code the tweets to differentiate between true information and misinformation as well as to identify the types of falsehoods. …”
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    Nature and Diffusion of Gynecologic Cancer–Related Misinformation on Social Media: Analysis of Tweets
  5. 5405
    “…METHODS: Total DNA was isolated from oral swabs collected from three wild snake species (Indian Cobra, King Cobra and Indian Python). Next, the DNA was subjected to PCR amplification of microbial 16S rRNA gene using V3-region-specific primers. …”
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    Next-generation sequencing analysis reveals high bacterial diversity in wild venomous and non-venomous snakes from India.
  6. 5406
    “…A public instance of FLEA is hosted at http://flea.datamonkey.org. The Python source code for the FLEA pipeline can be found at https://github.com/veg/flea-pipeline. …”
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    Full-Length Envelope Analyzer (FLEA): A tool for longitudinal analysis of viral amplicons
  7. 5407
    “…VAPiD is programmed in Python and is compatible with Windows, Linux, and Mac OS systems. …”
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    VAPiD: a lightweight cross-platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank
  8. 5408
    “…Moreover, the design of the firmware to control the hardware setup of the system and the user-level python-based script for data acquisition is proposed. …”
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    LiDARPheno – A Low-Cost LiDAR-Based 3D Scanning System for Leaf Morphological Trait Extraction
  9. 5409
    “…To facilitate adoption of this new approach, we provide a free and easy-to-use Python program that analyzes thermal unfolding data and implements the isothermal approach described herein (https://sourceforge.net/projects/dsf-fitting).…”
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    Isothermal Analysis of ThermoFluor Data can readily provide Quantitative Binding Affinities
  10. 5410
    “…Protocols registered at PROSPERO during the same period were obtained by web scraping all non-Cochrane records with a Python script. After excluding protocols that had a fulfillment or duplication rate of less than 90%, they were classified as published “only in PROSPERO”, “only in journals”, or in “journals and PROSPERO”. …”
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    Evolution of international collaborative research efforts to develop non-Cochrane systematic reviews
  11. 5411
    “…Analysis of the database was performed using SQL and Python. Results: Three months after the pharmacist intervention there was an increase on average PDC from 50.2% (SD: 30.1) to 66.9% (SD: 29.9) for rosuvastatin, from 50.8% (SD: 30.3) to 68% (SD: 29.3) for irbesartan and from 47.3% (SD: 28.4) to 66.3% (SD: 27.3) for desvenlafaxine. …”
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    Using Dispensing Data to Evaluate Adherence Implementation Rates in Community Pharmacy
  12. 5412
    “…METHODS AND MATERIALS: 3D‐printing materials were radiologically analyzed to identify a material with properties suitable for use as a bolus cap. A Python script was developed within a commercial treatment planning system to automate the creation of a ready‐to‐print, patient‐specific 3D bolus cap model. …”
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    Development and validation of a 3D‐printed bolus cap for total scalp irradiation
  13. 5413
    “…This analysis is being done with Python, and a parallel version of the algorithms is available with Apache Spark to provide scalability as needed. …”
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    VIGLA-M: visual gene expression data analytics
  14. 5414
    “…Following a modular structure developed in Python scripting language, the pipeline integrates established and newly developed algorithms. …”
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    Processing Pipeline for Atlas-Based Imaging Data Analysis of Structural and Functional Mouse Brain MRI (AIDAmri)
  15. 5415
    “…The software is freely available as a Python package at https://github.com/sdomanskyi/DigitalCellSorter. …”
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    Polled Digital Cell Sorter (p-DCS): Automatic identification of hematological cell types from single cell RNA-sequencing clusters
  16. 5416
    “…DMRs were identified using comb-p in Python. Results were validated in the Rotterdam Study (233 never-smokers) and methylation-expression associations were assessed using Biobank-based Integrative Omics Study data (n = 2802). …”
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    Occupational exposure to gases/fumes and mineral dust affect DNA methylation levels of genes regulating expression
  17. 5417
    “…Boa(g) provides a massive improvement from existing solutions like Python and MongoDB, by utilizing a domain-specific language that uses Hadoop infrastructure for a smaller storage footprint that scales well and requires fewer lines of code. …”
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    Shared data science infrastructure for genomics data
  18. 5418
    “…A careful selection of the applied bits (interaction definitions) and IFP filtering rules can improve the results of virtual screening (in terms of their agreement with the consensus metric). The open-source Python package FPKit was introduced for the similarity calculations and IFP filtering; it is available at: https://github.com/davidbajusz/fpkit. …”
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    Life beyond the Tanimoto coefficient: similarity measures for interaction fingerprints
  19. 5419
    “…Our approach is implemented and available in the Python package doepipeline. CONCLUSIONS: Our proposed methodology provides a systematic and robust framework for optimizing software parameter settings, in contrast to labor- and time-intensive manual parameter tweaking. …”
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    doepipeline: a systematic approach to optimizing multi-level and multi-step data processing workflows
  20. 5420
    por Sullivan, Timothy
    Publicado 2019
    “…Analyses were performed in Python using the scikit-learn and nltk libraries. …”
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    2063. Using Twitter Data and Machine Learning to Identify Outpatient Antibiotic Misuse: A Proof-of-Concept Study
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