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  1. 5661
    “…In addition, a support vector machine (SVM) model was constructed by using the scikit-learn algorithm in Python. Next, the crosstalk gene-TF network and crosstalk gene-DEP (differentially expressed pathway) network were each constructed. …”
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    Shared Molecular Mechanisms between Alzheimer's Disease and Periodontitis Revealed by Transcriptomic Analysis
  2. 5662
    “…We have developed QSAR-Co-X, an open source python–based toolkit (available to download at https://github.com/ncordeirfcup/QSAR-Co-X) for supporting mt-QSAR modelling following the Box-Jenkins moving average approach. …”
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    QSAR-Co-X: an open source toolkit for multitarget QSAR modelling
  3. 5663
    “…Search terms were extracted using the local language of the respective country. Python scripts were used for data mining. All statistical calculations were performed through exploratory data analysis and nonparametric Mann–Whitney U tests. …”
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    Google Trends for Pain Search Terms in the World’s Most Populated Regions Before and After the First Recorded COVID-19 Case: Infodemiological Study
  4. 5664
    “…METHODS: SARS-CoV-2 sequences obtained from human nasopharyngeal samples by Illumina next-generation sequencing were analysed using Nextclade and an in-house Python script and were compared using BLASTn to the GISAID database. …”
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    Spreading of a new SARS-CoV-2 N501Y spike variant in a new lineage
  5. 5665
    por Kim, Hyerim, Lim, Dong Hoon, Kim, Yoona
    Publicado 2021
    “…A DNN model comprising one input layer with 7 nodes, three hidden layers with 30 nodes, 12 nodes, 8 nodes in each layer and one output layer with one node were implemented in Python programming language using Keras with tensorflow backend. …”
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    Classification and Prediction on the Effects of Nutritional Intake on Overweight/Obesity, Dyslipidemia, Hypertension and Type 2 Diabetes Mellitus Using Deep Learning Model: 4–7th Korea National Health and Nutrition Examination Survey
  6. 5666
    “…CONCLUSIONS: SCAPP is an easy to use Python package that enables the assembly of full plasmid sequences from metagenomic samples. …”
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    SCAPP: an algorithm for improved plasmid assembly in metagenomes
  7. 5667
    por Min, Jing, Chen, Yan, Wang, Li, He, Ting, Tang, Sha
    Publicado 2021
    “…METHODS: By using the Python program, a rich dataset contained 22,746 doctor-patient dialogues from December 2017 to December 2018 is collected from the biggest OHC in China. …”
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    Diabetes self-management in online health communities: an information exchange perspective
  8. 5668
    “…METHODS: In this feasibility study, we identified true matches and discrepancies between de-identified data sets using the Python Record Linkage Toolkit. Four commercial fishing data sets from Oregon and Washington were linked: the Commercial Fishing Incident Database, the Vessel Casualty Database, the Nonfatal Injuries Database, and the Oregon Trauma Registry. …”
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    Application of data linkage techniques to Pacific Northwest commercial fishing injury and fatality data
  9. 5669
    “…We provide a freely available Python implementation of our p value method that can serve as a general tool for detecting long-range interactions in collective systems of self-driven agents.…”
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    Detecting long-range interactions between migrating cells
  10. 5670
    “…The probabilistic-deterministic model QMRAcatch (v 1.1 python backwater) was modified and extended to account for short-time variations in flow and microbial transport at hourly time steps. …”
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    Genetic Microbial Source Tracking Support QMRA Modeling for a Riverine Wetland Drinking Water Resource
  11. 5671
    “…Our implementation is available at github.com/hoomanzabeti/INGOT_DR and can be installed via The Python Package Index (Pypi) under ingotdr. This package is also compatible with most of the tools in the Scikit-learn machine learning library.…”
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    INGOT-DR: an interpretable classifier for predicting drug resistance in M. tuberculosis
  12. 5672
    “…METHODS: We used the ‘streetview’ python script to download historic Google Street View (GSV) images taken between 2012 and 2016 across specific locations in the Taranaki region. …”
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    Improving spatial data in health geographics: a practical approach for testing data to measure children’s physical activity and food environments using Google Street View
  13. 5673
    “…To extract various canopy profile features, such as canopy cover and canopy volume index, we developed a complete data collection and processing pipeline called Virtual Orchard (VO) in Python environment. Canopy fPAR estimated by VO throughout the season was compared against midday canopy fPAR measured by a mobile lightbar platform in midseason, achieving a strong correlation (R(2)) of 0.96. …”
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    Estimation of Fractional Photosynthetically Active Radiation From a Canopy 3D Model; Case Study: Almond Yield Prediction
  14. 5674
    por Schultz, É., Ward, J.K.
    Publicado 2021
    “…We conducted statistical analysis using Python (Pandas—SciPy—Statsmodels) with Chi-squared and Wilcoxon rank-sum tests to control for statistical significance. …”
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    Public perceptions of scientific advice: toward a science savvy public culture?
  15. 5675
    “…CAMPAREE was developed in Python, is open source, and freely available at https://github.com/itmat/CAMPAREE. …”
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    CAMPAREE: a robust and configurable RNA expression simulator
  16. 5676
    “…METHODS: A new artificial neural network (ANN) classification model was developed and tested in Python programming language with a first data set of 301 cases and a second data set of 176 cases for a total of 477 cases of PCM at diagnosis. …”
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    Artificial Intelligence in Plasma Cell Myeloma: Neural Networks and Support Vector Machines in the Classification of Plasma Cell Myeloma Data at Diagnosis
  17. 5677
    por Senkin, Sergey
    Publicado 2021
    “…It comprises a set of Python scripts unified in a single Nextflow pipeline with containerisation for cross-platform reproducibility and scalability in high-performance computing environments. …”
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    MSA: reproducible mutational signature attribution with confidence based on simulations
  18. 5678
    “…The synthetic dataset will be available as open access for researchers at OSF.io and the DeepFake generator available at the Python Package Index (PyPI) for generating synthetic ECGs. …”
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    DeepFake electrocardiograms using generative adversarial networks are the beginning of the end for privacy issues in medicine
  19. 5679
    “…The DCNN was created in Python with Pytorch, and relies on a Mask-RCNN architecture. …”
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    Mask, Train, Repeat! Artificial Intelligence for Quantitative Wood Anatomy
  20. 5680
    “…Meanwhile, other features are underutilized, such as security and convergence time. Python is also the most commonly used language in papers, accounting for 75% of the time. …”
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    The COVID-19 epidemic analysis and diagnosis using deep learning: A systematic literature review and future directions
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