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  1. 1921
    “…Programs for the Sellers algorithm, the Neighbor-Joining tree construction algorithm and an algorithm for parsing BLAST file outputs were implemented in C, C++, C#, Java, Perl and Python. RESULTS: Implementations in C and C++ were fastest and used the least memory. …”
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    A comparison of common programming languages used in bioinformatics
  2. 1922
    “…The original literature describing these models was examined and code was developed to allow for their use within a Python based least squares refinement algorithm. The NIST interest in the FPA method is specific to its ability to account for the optical aberrations of the powder diffraction experiment allowing for an accurate assessment of lattice parameter values. …”
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    Online Artículo Texto
    An Implementation of the Fundamental Parameters Approach for Analysis of X-ray Powder Diffraction Line Profiles
  3. 1923
    por Arslan, Ahmed, van Noort, Vera
    Publicado 2017
    “…AVAILABILITY AND IMPLEMENTATION: The package is available from https://github.com/CSB-KUL/yMap and is implemented in Python. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
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    Online Artículo Texto
    yMap: an automated method to map yeast variants to protein modifications and functional regions
  4. 1924
    “…Here we discuss how to set up an Ardunio and Python based platform system to control a Go/No-Go sensory behavior paradigm. …”
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    Online Artículo Texto
    A Reward-Based Behavioral Platform to Measure Neural Activity during Head-Fixed Behavior
  5. 1925
    “…Here we present Singularity Hub, a framework to build and deploy Singularity containers for mobility of compute, and the singularity-python software with novel metrics for assessing reproducibility of such containers. …”
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    Online Artículo Texto
    Enhancing reproducibility in scientific computing: Metrics and registry for Singularity containers
  6. 1926
    “…The open‐source hgvs Python package (https://github.com/biocommons/hgvs) provides a programmatic interface for parsing, manipulating, formatting, and validating of variants according to the HGVS recommendations, but does not provide a user‐friendly Web interface. …”
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    Online Artículo Texto
    VariantValidator: Accurate validation, mapping, and formatting of sequence variation descriptions
  7. 1927
    “…We provide python and perl parsers for common formats. AVAILABILITY AND IMPLEMENTATION: The software is available at: www.bioinf.uni-leipzig.de/Software/DIEGO. …”
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    Online Artículo Texto
    DIEGO: detection of differential alternative splicing using Aitchison’s geometry
  8. 1928
    “…It now provides a choice of interface; users can write scripts in Python if they choose, while those who prefer to construct experiments graphically can use the new Builder interface. …”
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    Online Artículo Texto
    PsychoPy2: Experiments in behavior made easy
  9. 1929
    por Yuan, Fei, Nguyen, Hoa, Graur, Dan
    Publicado 2019
    “…The latest stable release is also available on PyPI (the Python Package Index).…”
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    Online Artículo Texto
    ProtParCon: A Framework for Processing Molecular Data and Identifying Parallel and Convergent Amino Acid Replacements
  10. 1930
    “…Independent projects to create and publish Python/R native CA interface libraries have reached an advanced stage, and a number of automation workflows are already published. …”
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    Online Artículo Texto
    Cytoscape Automation: empowering workflow-based network analysis
  11. 1931
    “…We exploit the accessible nature of open standards to use R and Python to analyze and backup data from the BD Influx cell sorter. …”
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    Online Artículo Texto
    Automating the Shared Resource Laboratory Using Computer Scripts: A Case Report
  12. 1932
    por Buchmann, Jan P, Holmes, Edward C
    Publicado 2020
    “…SUMMARY: We present NCBI-taxonomist—a command-line tool written in Python that collects and manages taxonomic data from the National Center for Biotechnology Information (NCBI). …”
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    Online Artículo Texto
    Collecting and managing taxonomic data with NCBI-taxonomist
  13. 1933
    “…Decombinator was one of the early Python software packages released to analyse the rapidly increasing flow of T-cell receptor repertoire sequence data. …”
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    Online Artículo Texto
    Decombinator V4: an improved AIRR-C compliant-software package for T-cell receptor sequence annotation?
  14. 1934
    “…In this method, a list of disease eponyms is first manually collected in an Excel file. A Python script then creates permutations of the eponyms that might exist in the cited literature. …”
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    Online Artículo Texto
    A Biopython-based method for comprehensively searching for eponyms in Pubmed
  15. 1935
    “…Here, we present GenRisk, a python package for the computation and the integration of gene scores based on the burden of rare deleterious variants and common-variants-based polygenic risk scores. …”
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    Online Artículo Texto
    GenRisk: a tool for comprehensive genetic risk modeling
  16. 1936
    “…SIMPLE SUMMARY: In this work we present MAGE, an open-source Python package developed for the meta-analysis of gene expression data. …”
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    Online Artículo Texto
    MAGE: An Open-Source Tool for Meta-Analysis of Gene Expression Studies
  17. 1937
    por Haloi, Saurav
    Publicado 2015
    “…This book assumes you to have some prior knowledge of distributed systems and high-level programming knowledge of C, Java, or Python, but no experience with Apache ZooKeeper is required.…”
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    Apache ZooKeeper essentials
  18. 1938
    por Holdroyd, Tony
    Publicado 2019
    “…TensorFlow is one of the most popular machine learning frameworks in Python. With this book, you will improve your knowledge of some of the latest TensorFlow features and will be able to perform supervised and unsupervised machine learning and also train neural networks.…”
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    TensorFlow 2.0 quick start guide: get up to speed with the newly introduced features of TensorFlow 2.0
  19. 1939
    por Maxouti, Maria
    Publicado 2020
    “…LHC data were extracted from NXCALS, refined and improved via Python / Spark. The refined data were then exported to a short-term database (Influx DB) for easy and fast interactive querying and then Grafana dashboards were created for end users to present their data.…”
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    Migrate the LHC Dashboard to Grafana and the CERN Cloud
  20. 1940
    por Tomás, R
    Publicado 2007
    “…MAPCLASS is a code written in PYTHON conceived to optimize the non-linear aberrations of the Final Focus System of CLIC. …”
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    MAPCLASS: a code to optimize high order aberrations
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