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  1. 1961
    “…Availability and Implementation: MySQL database, source code and binaries freely available for academic/government use at http://wiki.chasmsoftware.org, Source in Python and C++. Requires 32 or 64-bit Linux system (tested on Fedora Core 8,10,11 and Ubuntu 10), 2.5*≤ Python <3.0*, MySQL server >5.0, 60 GB available hard disk space (50 MB for software and data files, 40 GB for MySQL database dump when uncompressed), 2 GB of RAM. …”
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    CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer
  2. 1962
    “…METHODS: All the programs under CONS-COCOMAPS have been written in python, taking advantage of python libraries such as SciPy and Matplotlib. …”
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    CONS-COCOMAPS: a novel tool to measure and visualize the conservation of inter-residue contacts in multiple docking solutions
  3. 1963
    “…We have used the connection generator interface to connect C++ and Python implementations of the previously described connection-set algebra to the NEST simulator. …”
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    Efficient generation of connectivity in neuronal networks from simulator-independent descriptions
  4. 1964
    “…Together, they improve workflow reproducibility and researcher productivity by enabling popular languages (e.g., Python and R, JavaScript, and C#) and tools (e.g., IPython/Jupyter Notebook and RStudio) to directly define and query networks, and perform network analysis, layouts and renderings. …”
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    CyREST: Turbocharging Cytoscape Access for External Tools via a RESTful API
  5. 1965
    “…Accordingly, this study aimed to report the occurrence of mycobacteriosis with clinical pneumonia in one exotic python snake (Python molurus) and one native green snake (Philodryas olfersii) from the Sorocaba Zoo, São Paulo state, Brazil. …”
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    Mycobacterium genavense infection in two species of captive snakes
  6. 1966
    “…AVAILABILITY AND IMPLEMENTATION: A Python package (Python 3) and analysis scripts for reproducing the results are availability on https://bitbucket.org/dudleylab/acdc. …”
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    Automated cell type discovery and classification through knowledge transfer
  7. 1967
    “…AVAILABILITY AND IMPLEMENTATION: The software is implemented in Python 3 and runs in both Python 2.7 and 3.4—on Macintosh and Linux systems. …”
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    DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
  8. 1968
    “…SUMMARY: CABS-dock standalone is a multiplatform Python package for protein–peptide docking with backbone flexibility. …”
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    CABS-dock standalone: a toolbox for flexible protein–peptide docking
  9. 1969
    “…We present fmrisim, a new Python package for standardized, realistic simulation of fMRI data. …”
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    Facilitating open-science with realistic fMRI simulation: validation and application
  10. 1970
    “…Common throughout southeastern Asia and Australia, R. orientalis is believed to have been introduced into southern Florida, United States along with Burmese pythons (Python bivittatus) in the 1990s. While the invasive range of Burmese pythons is restricted to southern Florida, R. orientalis has advanced north in the state in native snake species. …”
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    Case Report: Invasive Pentastomes, Raillietiella orientalis (Sambon, 1922), in a Free-Ranging Banded Water Snake (Nerodia fasciata) in North Central Florida, USA
  11. 1971
    “…The open source extension, programmed in Python language, manages the connection process and offers a communication layer accessible from any point of the medical image suite infrastructure. …”
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    SlicerArduino: A Bridge between Medical Imaging Platform and Microcontroller
  12. 1972
    “…OBJECTIVES: To enhance reproducible research by creating a broadly accessible, free, open-source software tool for connecting Microsoft Word to statistical programs (R/R Markdown, Python, SAS, Stata) so that results may be automatically updated in a manuscript. …”
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    Facilitating reproducible research through direct connection of data analysis with manuscript preparation: StatTag for connecting statistical software to Microsoft Word
  13. 1973
    “…The software suite is written in Python 3, with an OpenCL back end for GPU and multi-CPU core processing. …”
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    speckle-tracking: a software suite for ptychographic X-ray speckle tracking
  14. 1974
    “…Here, we present ppx, a Python package that provides easy, programmatic access to the data stored in ProteomeXchange repositories, such as PRIDE and MassIVE. …”
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    ppx: Programmatic access to proteomics data repositories
  15. 1975
    “…The program is designed in Python, with the feature of multiprocessing for simultaneous region-of-interest (ROI) detection, covering both the atrium and ventricle regions in the video, and was designed to be simple and user-friendly, having utility even for users who are unfamiliar with Python. …”
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    An OpenCV-Based Approach for Automated Cardiac Rhythm Measurement in Zebrafish from Video Datasets
  16. 1976
    “…Extensions of the classification analysis are presented including both geometric- and accuracy-based representational similarity analysis, implemented in Python. Common choices of implementation are presented and discussed. …”
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    Time-resolved multivariate pattern analysis of infant EEG data: A practical tutorial
  17. 1977
    por Fajiculay, Erickson, Hsu, Chao-Ping
    Publicado 2022
    “…In this study, we developed a python-based software that supports these features, with both deterministic and stochastic propagations. …”
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    BioSANS: A software package for symbolic and numeric biological simulation
  18. 1978
    “…The contributions of our work include (1) providing detailed CAD drawings, part lists, and assembly instructions for building a low friction double pendulum. (2) A new tracking algorithm written in Python for tracking the position of both links of the double pendulum. …”
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    Low-cost double pendulum for high-quality data collection with open-source video tracking and analysis
  19. 1979
    “…A subset of these eponyms was deemed to be dermatology-focused by a panel of experienced dermatologists. Python scripts were used to permute eponyms into multiple variations and automatically search PubMed using BioPython’s Entrez library. …”
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    Trends in dermatology eponyms
  20. 1980
    “…Our method [1] takes the form of a snakemake [2] pipeline, consisting of a Python [3] script using the Biopython [4] module that simulates integrations of a viral reference into a host reference. …”
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    A bioinformatic pipeline for simulating viral integration data
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