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  1. 83801
    “…Multipoint parametric and nonparametric linkage analyses (NPL) were performed using programs GENEHUNTER, MERLIN, SIMWALK2, and S.A.G.E. SIBPAL. Our results suggested that the densest SNP map (0.3 cM) had the greatest power to detect linkage for the original trait (genetic heterogeneity), with the highest LOD score/NPL score and mapping precision. …”
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    Linkage analysis of the GAW14 simulated dataset with microsatellite and single-nucleotide polymorphism markers in large pedigrees
  2. 83802
    “…Aberrant expression of such genes in cancer was indicated by in silico SAGE. Differential expression of selected genes was assessed by real-time PCR in hematopoietic cells from chronic myeloid leukemia patients and healthy individuals. …”
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    Common molecular pathways involved in human CD133+/CD34+ progenitor cell expansion and cancer
  3. 83803
    “…BACKGROUND: Chinese herbal extract Number Ten (NT) is a dietary herbal formulation prepared from rhubarb, ginger, astragalus, red sage and tumeric. This study tested the effectiveness of NT in reducing body weight gain in rats. …”
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    Effect of an herbal extract Number Ten (NT) on body weight in rats
  4. 83804
    por Mandal, Soma, Davie, James R
    Publicado 2007
    “…METHODS: Public repositories of SAGE and MA gene expression data generated from E2 deprived ER(+)ve breast cancer cell lines, MCF-7 and ZR75-1 were compared with normal breast tissue. …”
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    An integrated analysis of genes and pathways exhibiting metabolic differences between estrogen receptor positive breast cancer cells
  5. 83805
    “…This database provides basic genomic information, such as predicted genes, expressed sequence tags (ESTs), guanine/cytosine (GC) content, repeats and comparative genomics, as well as unique data resources including (i) 2473 genetic markers and experimentally confirmed PCR primers that amplify these markers, (ii) 142 414 bacterial artificial chromosome (BAC) and 217 344 fosmid end sequences that amount to 15.0- and 11.1-fold clone coverage of the entire genome, respectively, and were used for draft genome assembly, (iii) 16 519 460 single nucleotide polymorphisms (SNPs), and 2 859 905 insertions/deletions detected between two medaka inbred strain genomes and (iv) 841 235 5′-end serial analyses of gene-expression (SAGE) tags that identified 344 266 transcription start sites on the genome. …”
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    UTGB/medaka: genomic resource database for medaka biology
  6. 83806
    “…Following analysis of the expression patterns of all selected and sequenced genes through interrogation of SAGE databases, a further three genes from our clone set, HOXB13, SPON2 and NCAM2, emerged as additional candidate markers of human prostate cancer. …”
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    Expression analysis onto microarrays of randomly selected cDNA clones highlights HOXB13 as a marker of human prostate cancer
  7. 83807
    “…These were not found in a recent SAGE analysis of the same cell line. Hypoxia induced downregulation of Cyclin D1 in nonrenal cells via an HIF independent pathway. …”
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    Gene array of VHL mutation and hypoxia shows novel hypoxia-induced genes and that cyclin D1 is a VHL target gene
  8. 83808
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    Overcoming challenges in designing and implementing a phase II randomized controlled trial using a presurgical model to test a dietary intervention in prostate cancer
  9. 83809
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    The impact of helminths on the response to immunization and on the incidence of infection and disease in childhood in Uganda: design of a randomized, double-blind, placebo-controlled, factorial trial of deworming interventions delivered in pregnancy and early childhood [ISRCTN32849447]
  10. 83810
    “…While designed for metagenomic applications, our software can also be applied to digital gene expression studies (e.g. SAGE). A web server implementation of our methods and freely available source code can be found at http://metastats.cbcb.umd.edu/.…”
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    Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples
  11. 83811
    “…We examined the effects of an annual grass invasion on ground arthropod assemblages in the coastal sage scrub (CSS) of southern California. Bottom-up food web theory predicts that the addition of detritus would increase generalist-feeding arthropods at all trophic levels; accordingly, we expected increases in fungi, Collembola, and common predators such as mites and spiders. …”
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    Complex responses to invasive grass litter by ground arthropods in a Mediterranean scrub ecosystem
  12. 83812
    “…For expression profiling, the SuperSAGE method was adapted for use with Illumina sequencing technology. …”
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    Gene expression analysis in cadmium-stressed roots of a low cadmium-accumulating solanaceous plant, Solanum torvum
  13. 83813
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    The Tsim Tsoum Approaches for Prevention of Cardiovascular Disease
  14. 83814
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    Collection and processing of whole blood for transformation of peripheral blood mononuclear cells and extraction of DNA: the Type 1 Diabetes Genetics Consortium
  15. 83815
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    Epidemiological Investigation of Bovine Ephemeral Fever Outbreaks in Israel
  16. 83816
    “…We also used this approach to predict SL interactions between all non-essential gene pairs in yeast (http://sage.fhcrc.org/downloads/downloads/predicted_yeast_genetic_interactions.zip). …”
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    An Integrative Multi-Network and Multi-Classifier Approach to Predict Genetic Interactions
  17. 83817
    “…Pyrosequencing assays were utilized to assess the DNA methylation of the tumors, and SAGE libraries were constructed and sequenced to determine the gene expression profiles of the tumors. …”
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    Microenvironment alters epigenetic and gene expression profiles in Swarm rat chondrosarcoma tumors
  18. 83818
    “…Health status was assessed using the short SAGE (Study on Global AGEing and Adult Health) form. …”
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    The health and well-being of older people in Nairobi's slums
  19. 83819
    “…DESIGN: A cross-sectional survey of 5,430 adults aged 50 and over using a shortened version of the SAGE questionnaire to assess self-reported assessments (scales of 1–5) of performance, function, disability, quality of life and well-being. …”
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    Social gradients in self-reported health and well-being among adults aged 50 and over in Pune District, India
  20. 83820
    “…Transcriptional profiling of F(1) super-hybrid rice Liangyou-2186 and its parents by serial analysis of gene expression (SAGE) revealed 1183 differentially expressed genes (DGs), among which DGs were found significantly enriched in pathways such as photosynthesis and carbon-fixation, and most of the key genes involved in the carbon-fixation pathway exhibited up-regulated expression in F(1) hybrid rice. …”
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    Comparative Transcriptional Profiling and Preliminary Study on Heterosis Mechanism of Super-Hybrid Rice
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