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83801por Yang, Xiaohong (Rose), Jacobs, Kevin, Kerstann, Kimberly F, Bergen, Andrew W, Goldstein, Alisa M, Goldin, Lynn R“…Multipoint parametric and nonparametric linkage analyses (NPL) were performed using programs GENEHUNTER, MERLIN, SIMWALK2, and S.A.G.E. SIBPAL. Our results suggested that the densest SNP map (0.3 cM) had the greatest power to detect linkage for the original trait (genetic heterogeneity), with the highest LOD score/NPL score and mapping precision. …”
Publicado 2005
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83802por Okamoto, Oswaldo Keith, Carvalho, Ana Carolina SR, Marti, Luciana C, Vêncio, Ricardo Z, Moreira-Filho, Carlos A“…Aberrant expression of such genes in cancer was indicated by in silico SAGE. Differential expression of selected genes was assessed by real-time PCR in hematopoietic cells from chronic myeloid leukemia patients and healthy individuals. …”
Publicado 2007
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83803“…BACKGROUND: Chinese herbal extract Number Ten (NT) is a dietary herbal formulation prepared from rhubarb, ginger, astragalus, red sage and tumeric. This study tested the effectiveness of NT in reducing body weight gain in rats. …”
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83804“…METHODS: Public repositories of SAGE and MA gene expression data generated from E2 deprived ER(+)ve breast cancer cell lines, MCF-7 and ZR75-1 were compared with normal breast tissue. …”
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83805por Ahsan, Budrul, Kobayashi, Daisuke, Yamada, Tomoyuki, Kasahara, Masahiro, Sasaki, Shin, Saito, Taro L., Nagayasu, Yukinobu, Doi, Koichiro, Nakatani, Yoichiro, Qu, Wei, Jindo, Tomoko, Shimada, Atsuko, Naruse, Kiyoshi, Toyoda, Atsushi, Kuroki, Yoko, Fujiyama, Asao, Sasaki, Takashi, Shimizu, Atsushi, Asakawa, Shuichi, Shimizu, Nobuyoshi, Hashimoto, Shin-ichi, Yang, Jun, Lee, Yongjun, Matsushima, Kouji, Sugano, Sumio, Sakaizumi, Mitsuru, Narita, Takanori, Ohishi, Kazuko, Haga, Shinobu, Ohta, Fumiko, Nomoto, Hisayo, Nogata, Keiko, Morishita, Tomomi, Endo, Tomoko, Shin-I, Tadasu, Takeda, Hiroyuki, Kohara, Yuji, Morishita, Shinichi“…This database provides basic genomic information, such as predicted genes, expressed sequence tags (ESTs), guanine/cytosine (GC) content, repeats and comparative genomics, as well as unique data resources including (i) 2473 genetic markers and experimentally confirmed PCR primers that amplify these markers, (ii) 142 414 bacterial artificial chromosome (BAC) and 217 344 fosmid end sequences that amount to 15.0- and 11.1-fold clone coverage of the entire genome, respectively, and were used for draft genome assembly, (iii) 16 519 460 single nucleotide polymorphisms (SNPs), and 2 859 905 insertions/deletions detected between two medaka inbred strain genomes and (iv) 841 235 5′-end serial analyses of gene-expression (SAGE) tags that identified 344 266 transcription start sites on the genome. …”
Publicado 2008
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83806por Edwards, S, Campbell, C, Flohr, P, Shipley, J, Giddings, I, te-Poele, R, Dodson, A, Foster, C, Clark, J, Jhavar, S, Kovacs, G, Cooper, C S“…Following analysis of the expression patterns of all selected and sequenced genes through interrogation of SAGE databases, a further three genes from our clone set, HOXB13, SPON2 and NCAM2, emerged as additional candidate markers of human prostate cancer. …”
Publicado 2005
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83807por Wykoff, C C, Sotiriou, C, Cockman, M E, Ratcliffe, P J, Maxwell, P, Liu, E, Harris, A L“…These were not found in a recent SAGE analysis of the same cell line. Hypoxia induced downregulation of Cyclin D1 in nonrenal cells via an HIF independent pathway. …”
Publicado 2004
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83808
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83809
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83810“…While designed for metagenomic applications, our software can also be applied to digital gene expression studies (e.g. SAGE). A web server implementation of our methods and freely available source code can be found at http://metastats.cbcb.umd.edu/.…”
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83811“…We examined the effects of an annual grass invasion on ground arthropod assemblages in the coastal sage scrub (CSS) of southern California. Bottom-up food web theory predicts that the addition of detritus would increase generalist-feeding arthropods at all trophic levels; accordingly, we expected increases in fungi, Collembola, and common predators such as mites and spiders. …”
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83812por Yamaguchi, Hirotaka, Fukuoka, Hiroyuki, Arao, Tomohito, Ohyama, Akio, Nunome, Tsukasa, Miyatake, Koji, Negoro, Satomi“…For expression profiling, the SuperSAGE method was adapted for use with Illumina sequencing technology. …”
Publicado 2010
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83814por Rosinger, Silke, Nutland, Sarah, Mickelson, Eric, Varney, Michael D, Boehm, Bernard O, Olsem, Gary J, Hansen, John A, Nicholson, Ian, Hilner, Joan E, Perdue, Letitia H, Pierce, June J, Akolkar, Beena, Nierras, Concepcion, Steffes, Michael WEnlace del recurso
Publicado 2010
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83815
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83816por Pandey, Gaurav, Zhang, Bin, Chang, Aaron N., Myers, Chad L., Zhu, Jun, Kumar, Vipin, Schadt, Eric E.“…We also used this approach to predict SL interactions between all non-essential gene pairs in yeast (http://sage.fhcrc.org/downloads/downloads/predicted_yeast_genetic_interactions.zip). …”
Publicado 2010
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83817por Hamm, Christopher A, Stevens, Jeff W, Xie, Hehuang, Vanin, Elio F, Morcuende, Jose A, Abdulkawy, Hakeem, Seftor, Elisabeth A, Sredni, Simone T, Bischof, Jared M, Wang, Deli, Malchenko, Sergey, de Fatima Bonaldo, Maria, Casavant, Thomas L, Hendrix, Mary JC, Soares, Marcelo B“…Pyrosequencing assays were utilized to assess the DNA methylation of the tumors, and SAGE libraries were constructed and sequenced to determine the gene expression profiles of the tumors. …”
Publicado 2010
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83818“…Health status was assessed using the short SAGE (Study on Global AGEing and Adult Health) form. …”
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83819“…DESIGN: A cross-sectional survey of 5,430 adults aged 50 and over using a shortened version of the SAGE questionnaire to assess self-reported assessments (scales of 1–5) of performance, function, disability, quality of life and well-being. …”
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83820por Song, Gui-Sheng, Zhai, Hong-Li, Peng, Yong-Gang, Zhang, Lei, Wei, Gang, Chen, Xiao-Ying, Xiao, Yu-Guo, Wang, Lili, Chen, Yue-Jun, Wu, Bin, Chen, Bin, Zhang, Yu, Chen, Hua, Feng, Xiu-Jing, Gong, Wan-Kui, Liu, Yao, Yin, Zhi-Jie, Wang, Feng, Liu, Guo-Zhen, Xu, Hong-Lin, Wei, Xiao-Li, Zhao, Xiao-Ling, Ouwerkerk, Pieter B.F., Hankemeier, Thomas, Reijmers, Theo, van der Heijden, Rob, Lu, Cong-Ming, Wang, Mei, van der Greef, Jan, Zhu, Zhen“…Transcriptional profiling of F(1) super-hybrid rice Liangyou-2186 and its parents by serial analysis of gene expression (SAGE) revealed 1183 differentially expressed genes (DGs), among which DGs were found significantly enriched in pathways such as photosynthesis and carbon-fixation, and most of the key genes involved in the carbon-fixation pathway exhibited up-regulated expression in F(1) hybrid rice. …”
Publicado 2010
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