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681por Ikegami, Hiroaki, Noguchi, Shingo, Fukuda, Kazumasa, Akata, Kentaro, Yamasaki, Kei, Kawanami, Toshinori, Mukae, Hiroshi, Yatera, Kazuhiro“…This study was conducted to investigate the optimal threshold for clustering 16S ribosomal RNA gene sequences into operational taxonomic units (OTUs) by comparing the results of NGS technology with those of the Sanger method, which has a higher accuracy of sequence per single read than NGS technology. …”
Publicado 2021
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682“…However, many studies were restricted to a few sequences generated by clone libraries and Sanger sequencing, which may have underestimated the diversity of As(III)-oxidizers in natural environments. …”
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683por Oliveira Netto, Alice Brinckmann, Brusius-Facchin, Ana Carolina, Leistner-Segal, Sandra, Kubaski, Francyne, Josahkian, Juliana, Giugliani, Roberto“…It is a sensitive and fast method for the detection of somatic mosaicism. Compared to Sanger sequencing, which represents a cumulative signal, NGS technology analyzes the sequence of each DNA read in a sample. …”
Publicado 2021
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684por Tran Mau‐Them, Frederic, Duffourd, Yannis, Vitobello, Antonio, Bruel, Ange‐Line, Denommé‐Pichon, Anne‐Sophie, Nambot, Sophie, Delanne, Julian, Moutton, Sebastien, Sorlin, Arthur, Couturier, Victor, Bourgeois, Valentin, Chevarin, Martin, Poe, Charlotte, Mosca‐Boidron, Anne‐Laure, Callier, Patrick, Safraou, Hana, Faivre, Laurence, Philippe, Christophe, Thauvin‐Robinet, Christel“…RESULTS: The allelic balance of parental‐pool variants was around 8.97%. Sanger sequencing uncovered false positives in 1.5% of sporadic variants. …”
Publicado 2021
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685por Cook, Courtney B., Armstrong, Linlea, Boerkoel, Cornelius F., Clarke, Lorne A., du Souich, Christèle, Demos, Michelle K., Gibson, William T., Gill, Harinder, Lopez, Elena, Patel, Millan S., Selby, Kathryn, Abu-Sharar, Ziad, Elliott, Alison M., Friedman, Jan M.“…In six of these cases, there was no evidence of mosaicism on Sanger sequencing—the variant was not detected on Sanger sequencing in three cases, and it appeared to be heterozygous in three others. …”
Publicado 2021
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686“…A novel alternative splicing variant detected by whole-exome sequencing was validated by Sanger sequencing. The functional effect of the mutation was predicted with Mutation Tasting. …”
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687por Bouchiat, Coralie, Ginevra, Christophe, Benito, Yvonne, Gaillard, Tiphaine, Salord, Hélène, Dauwalder, Olivier, Laurent, Frédéric, Vandenesch, François“…While 16S rRNA PCR-Sanger sequencing has paved the way for the diagnosis of culture-negative bacterial infections, it does not provide the composition of polymicrobial infections. …”
Publicado 2022
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688por Jia, Siyu, Li, Xiaojin, Zhang, Wei, Zhang, Bei, Wu, Zhen, Duan, Weijia, Ou, Xiaojuan, Zhou, Donghu, Huang, Jian“…BACKGROUND AND OBJECTIVE: Wilson disease (WD) is an autosomal recessive copper metabolic disorder caused by mutations in ATP7B. Sanger sequencing is currently used for ATP7B variant identification. …”
Publicado 2022
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689por Garrido-Cardenas, Jose Antonio, Garcia-Maroto, Federico, Alvarez-Bermejo, Jose Antonio, Manzano-Agugliaro, Francisco“…The first sequencing of a complete genome was published forty years ago by the double Nobel Prize in Chemistry winner Frederick Sanger. That corresponded to the small sized genome of a bacteriophage, but since then there have been many complex organisms whose DNA have been sequenced. …”
Publicado 2017
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690“…Methods: We used in silico prediction tools, reverse transcription (RT)‐PCR, and Sanger sequencing on blood/bone marrow‐derived RNA specimens to determine the aberrant splicing. …”
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691por Holt, Kathryn E., Teo, Yik Y., Li, Heng, Nair, Satheesh, Dougan, Gordon, Wain, John, Parkhill, Julian“…The Perl script is freely available from ftp://ftp.sanger.ac.uk/pub/pathogens/pools/. Contact: kh2@sanger.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online.…”
Publicado 2009
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692por Almagro-Garcia, Jacob, Manske, Magnus, Carret, Celine, Campino, Susana, Auburn, Sarah, MacInnis, Bronwyn L, Maslen, Gareth, Pain, Arnab, Newbold, Christopher I, Kwiatkowski, Dominic P, Clark, Taane G“…Availability and implementation: SnoopCGH is written in java and is available from http://snoopcgh.sourceforge.net/ Contact: jg10@sanger.ac.uk; tc5@sanger.ac.uk…”
Publicado 2009
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693“…The database can be accessed at http://www.sanger.ac.uk/PostGenomics/S_pombe/microarray/. Copyright © 2006 John Wiley & Sons, Ltd.…”
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694“…This gives researchers the possibility of designing studies with adequate power to identify rare variants at a fraction of the economic and labor resources required by individual Sanger sequencing. As of today, few research groups working in plant sciences have exploited this potentiality, showing that pooled NGS provides results in excellent agreement with those obtained by individual Sanger sequencing. …”
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695“…Availability: Code is available as part of the Bioconductor package deepSNV. Contact: mg14@sanger.ac.uk; pc8@sanger.ac.uk…”
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696“…The results of these four assays showed 100% concordant results and had 100% accuracy as verified by Sanger sequencing. CONCLUSIONS: All of the referred methods can be used for genotyping ALDH2 rs671 with the same accuracy compared to Sanger sequencing. …”
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697por Fujita, Shiro, Masago, Katsuhiro, Takeshita, Jumpei, Okuda, Chiyuki, Otsuka, Kyoko, Hata, Akito, Kaji, Reiko, Katakami, Nobuyuki, Hirata, Yukio“…METHODS: We validated the Ion Torrent Personal Genome Machine (PGM) system using the Ion AmpliSeq Cancer Hotspot Panel and compared the results with those obtained using the gold standard methods, conventional PCR and Sanger sequencing. The cycleave PCR method was used to verify the results. …”
Publicado 2015
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698por Yoon, Nara, Lim, Sharon, Kang, So Young, Kwon, Ghee Young, Jeon, Hwang Gyun, Jeong, Byong Chang, Seo, Seong Il, Jeon, Seong Soo, Lee, Hyun Moo, Choi, Han Yong“…Recently, whole exome sequencing of prostate cancer identified recurrent mutations involving MED12 in Caucasian patients, which finding was not reproduced in one subsequent study by Sanger sequencing. Thus, we investigated mutation status of MED12 in exons 2 and 26 by Sanger sequencing in 102 radical prostatectomy cases from Korean patients. …”
Publicado 2017
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699“…(Glu8Serfs*4), which was confirmed by Sanger sequencing and found to co-segregate with choroideremia. …”
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700por Naseer, Muhammad Imran, Abdulkareem, Angham Abdulrahman, Jan, Mohammed Mohammed, Chaudhary, Adeel G., Al-Qahtani, Mohammad H.“…METHODS: Whole exome sequencing (WES) and Sanger sequencing was performed to study the variant leading to the disease. …”
Publicado 2020
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