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721por Novak-Frazer, Lilyann, Anees-Hill, Samuel P, Hassan, Darin, Masania, Rikesh, Moore, Caroline B, Richardson, Malcolm D, Denning, David W, Rautemaa-Richardson, Riina“…METHODS: Method validation was performed by Sanger sequencing and pyrosequencing of 50 A. fumigatus isolates with a spectrum of triazole susceptibility patterns. …”
Publicado 2020
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722“…Single nucleotide variations (SNVs) and small insertions/deletions (InDels) identified were confirmed with Sanger sequencing. If the Sanger sequencing of a low-frequency variant (LFV) detected with targeted NGS was negative, PCR-based deep NGS was conducted for added confirmation. …”
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723por Mao, Linlin, Zhao, Weiwei, Li, Xiaoxia, Zhang, Shangfei, Zhou, Changhong, Zhou, Danyan, Ou, Xiaohua, Xu, Yanyan, Tang, Yuanxiao, Ou, Xiaoyong, Hu, Changming, Ding, Xiangdong, Luo, Pifu, Yu, Shihui“…The average EGFR mutation rate was 45.1%, with 40.3% identified by Sanger sequencing, 46.5% by real-time PCR and 47.5% by NGS. …”
Publicado 2021
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724por Shestak, Anna G., Makarov, Leonid M., Komoliatova, Vera N., Kolesnikova, Irina V., Skorodumova, Liubov O., Generozov, Edward V., Zaklyazminskaya, Elena V.“…Control Sanger and NGS sequencing revealed the absence p.S216L in the canonical exon 6 and confirmed the presence of p.S216L (g.38655522G>A, c.647C>T, and rs201002736) in the non-canonical exon 6 of the SCN5A gene. …”
Publicado 2021
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725por Abarca, Nadia, Santín, Mónica, Ortega, Sheila, Maloney, Jenny G., George, Nadja S., Molokin, Aleksey, Cardona, Guillermo A., Dashti, Alejandro, Köster, Pamela C., Bailo, Begoña, Hernández-de-Mingo, Marta, Muadica, Aly S., Calero-Bernal, Rafael, Carmena, David, González-Barrio, David“…Initial detection of Blastocystis and E. bieneusi was carried out by polymerase chain reaction (PCR) and Sanger sequencing of the small subunit (ssu) rRNA gene and internal transcribed spacer (ITS) region, respectively. …”
Publicado 2021
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726“…The combination of targeted next generation sequencing and Sanger sequencing may be a useful tool to diagnose PCD. …”
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727por Keidai, Yamato, Iwasaki, Yorihiro, Iwasaki, Kanako, Honjo, Sachiko, Bastepe, Murat, Hamasaki, Akihiro“…Sanger sequencing also ruled out any novel genetic alterations in the entire NESP55/AS region. …”
Publicado 2021
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728por Sberna, Giuseppe, Fabeni, Lavinia, Berno, Giulia, Carletti, Fabrizio, Specchiarello, Eliana, Colavita, Francesca, Meschi, Silvia, Matusali, Giulia, Garbuglia, Anna Rosa, Bordi, Licia, Lalle, Eleonora“…RESULTS: A total of 111/118 nasopharyngeal swabs were in complete agreement with the Sanger sequencing, whereas the remaining seven samples were not amplified due to the low viral load. …”
Publicado 2022
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729por Wang, Yu, Song, Zhen, Zhang, Lihua, Li, Na, Zhao, Jie, Yang, Ruifang, Ji, Shuhua, Sun, Ping“…METHODS: High-throughput sequencing was performed to analyze the genetic skin disorder-related genes of parents of the proband, and the variants were further confirmed in the other members by Sanger sequencing. Sanger sequencing, karyotype analysis, and chromosomal microarray analysis (CMA) were used together for prenatal diagnosis after the second pregnancy. …”
Publicado 2022
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730por Lhossein, Thomas, Sylvain, Karine, Descamps, Véronique, Morel, Virginie, Demey, Baptiste, Brochot, Etienne“…The NGS assay's unit cost fell rapidly as the number of samples per run increased. Compared with Sanger sequencing, the ABL NGS HIV genotyping assay is just as robust and somewhat more expensive but opens up interesting multiplexing perspectives for virology laboratories.…”
Publicado 2023
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731por Shepherd, Rebecca, Forbes, Simon A., Beare, David, Bamford, S., Cole, Charlotte G., Ward, Sari, Bindal, Nidhi, Gunasekaran, Prasad, Jia, Mingming, Kok, Chai Yin, Leung, Kenric, Menzies, Andrew, Butler, Adam P., Teague, Jon W., Campbell, Peter J., Stratton, Michael R., Futreal, P. Andrew“…Catalogue of Somatic Mutations in Cancer (COSMIC) (http://www.sanger.ac.uk/cosmic) is a publicly available resource providing information on somatic mutations implicated in human cancer. …”
Publicado 2011
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732“…Availability: http://www.sanger.ac.uk/resources/software/olorin Contact: olorin@sanger.ac.uk…”
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733por Hadiwikarta, Wahyu W., Van Dorst, Bieke, Hollanders, Karen, Stuyver, Lieven, Carlon, Enrico, Hooyberghs, Jef“…Seven coded clinical samples (HIV-1) are analyzed, and the microarray results are in full concordance with Sanger sequencing data. Moreover, the thermodynamic analysis of microarray signals resolves inherent ambiguities in Sanger data of mixed samples and provides additional clinically relevant information. …”
Publicado 2013
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734“…In the last decade, the toolkit for discovering DNA variants has undergone rapid evolution: mutations that were historically discovered by analog approaches like Sanger sequencing and multiplex ligation-dependent probe amplification (“MLPA”) can now be decoded from a digital signal with next-generation sequencing (“NGS”). …”
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735por Page, Andrew J., Cummins, Carla A., Hunt, Martin, Wong, Vanessa K., Reuter, Sandra, Holden, Matthew T.G., Fookes, Maria, Falush, Daniel, Keane, Jacqueline A., Parkhill, Julian“…Availability and implementation: Roary is implemented in Perl and is freely available under an open source GPLv3 license from http://sanger-pathogens.github.io/Roary Contact: roary@sanger.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online.…”
Publicado 2015
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736por Yang, Yongjia, Yuan, Jianying, Yao, Xu, Zhang, Rong, Yang, Hui, Zhao, Rui, Guo, Jihong, Jin, Ke, Mei, Haibo, Luo, Yongqi, Zhao, Liu, Tu, Ming, Zhu, Yimin“…Whole-genome sequencing and Sanger sequencing successfully detected breakpoints in the intragenic regions of BMRP1B and GRM4. …”
Publicado 2017
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737por Fujita, Shiro, Masago, Katsuhiro, Okuda, Chiyuki, Hata, Akito, Kaji, Reiko, Katakami, Nobuyuki, Hirata, Yukio“…Nine of the analyzed SNVs were shown to be false positives when confirmed by Sanger sequencing. All but one SNV were considered to be homopolymer regions, mainly through the insertion or deletion of nucleotides. …”
Publicado 2017
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738“…Haplotypes of PCR products, including UGT1A1⁎6 and UGT1A1⁎28, were successfully analyzed by Sanger sequencing with allele-specific primers. Also, haplotypes of PCR products, including K1637K and S1647T, could not be determined by Sanger sequencing with allele-specific primers but were successfully analyzed by pyrosequencing with ddNTP-blocked primers. …”
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739por Alehabib, Elham, Jamshidi, Javad, Ghaedi, Hamid, Emamalizadeh, Babak, Andarva, Monavvar, Daftarian, Narsis, Rezaei Kanavi, Mozhgan, Mohammadi Torbati, Peyman, Espandar, Goldis, Alinaghi, Somayeh, Johari, Amir Hossein, Saghally, Mansoor, Mohajerani, Fatemeh, Darvish, Hossein“…To detect the possible mutations, direct Sanger sequencing was performed for the only exon of TACSTD2 gene, and its boundary regions in all patients. …”
Publicado 2017
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740por Andres, Söenke, Gröschel, Matthias I., Hillemann, Doris, Merker, Matthias, Niemann, Stefan, Kranzer, Katharina“…In this prospective study, we propose a diagnostic algorithm combining phenotypic DST with Sanger sequencing to inform clinical decision-making for drug-resistant Mycobacterium tuberculosis complex isolates. …”
Publicado 2019
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