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8401“…M13-tagged primers were used to amplify short, overlapping RT-PCR products, which were then sequenced using Sanger dideoxynucleotide sequencing technology. We also modified a previously published method, developed for human H3N2 and avian H5N1 influenza viruses, which was based on the ligation of viral RNA and subsequent amplification by RT-PCR, to sequence the non-coding termini (NCRs). …”
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8402por Bonachea, Elizabeth M, Zender, Gloria, White, Peter, Corsmeier, Don, Newsom, David, Fitzgerald-Butt, Sara, Garg, Vidu, McBride, Kim L“…Among these variants, in-silico analysis classified 33 of these variants as putative disease-causing changes. Sanger sequencing confirmed thirty-one of these variants, found among 16 individuals. …”
Publicado 2014
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8403por Lin, Millicent, Chen, Jie-Fu, Lu, Yi-Tsung, Zhang, Yang, Song, Jinzhao, Hou, Shuang, Ke, Zunfu, Tseng, Hsian-Rong“…The individually isolated CTCs can be subjected to single-CTC genotyping (e.g., Sanger sequencing and next-generation sequencing, NGS) to verify the CTC’s role as tumor liquid biopsy. …”
Publicado 2014
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8404por Bartram, Isabelle, Gökbuget, Nicola, Schlee, Cornelia, Heesch, Sandra, Fransecky, Lars, Schwartz, Stefan, Stuhlmann, Reingard, Schäfer-Eckhart, Kerstin, Starck, Michael, Reichle, Albrecht, Hoelzer, Dieter, Baldus, Claudia D, Neumann, Martin“…The mutational status (exon 4) of BCL11b was analyzed by Sanger sequencing and mRNA expression levels were determined by quantitative real-time PCR. …”
Publicado 2014
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8405por Andrea, Hauser, Alexandra, Hofmann, Claudia, Santos-Hoevener, Ruth, Zimmermann, Osamah, Hamouda, Norbert, Bannert, Claudia, Kuecherer“…PCR amplicons were sequenced (Sanger) to analyze genotypic resistance and the HIV-1 subtype. …”
Publicado 2014
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8406por Carganico, Andreas, Dupke, Stefan, Ehret, Robert, Berg, Thomas, Baumgarten, Axel, Obermeier, Martin, Walter, Hauke“…Drug susceptibility testing was performed by RT-PCR from plasma and subsequent Sanger sequencing. Tropism testing was done from proviral DNA with FPR cut-offs according to the German recommendations. …”
Publicado 2014
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8407por Mendum, Tom A, Schuenemann, Verena J, Roffey, Simon, Taylor, G Michael, Wu, Huihai, Singh, Pushpendra, Tucker, Katie, Hinds, Jason, Cole, Stewart T, Kierzek, Andrzej M, Nieselt, Kay, Krause, Johannes, Stewart, Graham R“…Known M. leprae polymorphisms were PCR amplified and Sanger sequenced, while draft genomes were generated by enriching for M. leprae DNA, and Illumina sequencing. …”
Publicado 2014
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8408por Archer, John, Whiteley, Gareth, Casewell, Nicholas R, Harrison, Robert A, Wagstaff, Simon C“…RESULTS: We validated VTBuilder using reads simulated from 54 Sanger sequenced transcripts (SSTs) expressed in the venom gland of the saw scaled viper, Echis ocellatus. …”
Publicado 2014
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8409por Tappe, Julia, Jordan, Daniela, Janecek, Elisabeth, Fingerle, Volker, Strube, Christina“…METHODS: A total of 2100 questing ticks were collected and analysed by quantitative real-time PCR (qPCR) with subsequent species differentiation via Reverse Line Blot and Sanger sequencing. Simultaneously, results obtained in 2010 were compared to infection rates from 2005 to evaluate the development of B. burgdorferi s.l. infection rates in Hanoverian ticks. …”
Publicado 2014
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8410por Dénes, Judit, Swords, Francesca, Rattenberry, Eleanor, Stals, Karen, Owens, Martina, Cranston, Treena, Xekouki, Paraskevi, Moran, Linda, Kumar, Ajith, Wassif, Christopher, Fersht, Naomi, Baldeweg, Stephanie E., Morris, Damian, Lightman, Stafford, Agha, Amar, Rees, Aled, Grieve, Joan, Powell, Michael, Boguszewski, Cesar Luiz, Dutta, Pinaki, Thakker, Rajesh V., Srirangalingam, Umasuthan, Thompson, Chris J., Druce, Maralyn, Higham, Claire, Davis, Julian, Eeles, Rosalind, Stevenson, Mark, O'Sullivan, Brendan, Taniere, Phillipe, Skordilis, Kassiani, Gabrovska, Plamena, Barlier, Anne, Webb, Susan M., Aulinas, Anna, Drake, William M., Bevan, John S., Preda, Cristina, Dalantaeva, Nadezhda, Ribeiro-Oliveira, Antônio, Garcia, Isabel Tena, Yordanova, Galina, Iotova, Violeta, Evanson, Jane, Grossman, Ashley B., Trouillas, Jacqueline, Ellard, Sian, Stratakis, Constantine A., Maher, Eamonn R., Roncaroli, Federico, Korbonits, Márta“…Known pheo/PGL genes (SDHA-D, SDHAF2, RET, VHL, TMEM127, MAX, FH) and pituitary adenoma genes (MEN1, AIP, CDKN1B) were sequenced using next generation or Sanger sequencing. Loss of heterozygosity study and pathological studies were performed on the available tumor samples. …”
Publicado 2015
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8411por Kang, Sheng, Hong, Xuan, Ruan, Chang-wu, Yu, Ping, Yu, Shan-shan, Chen, Ming, Zhang, Dai-fu, Fan, Hui-min, Liu, Zhong-min“…METHODS: This study was based on cross-sectional survey data. 1794 and 1718 subjects’ ADRB1 and GRK5 gene sequencing (sanger method) data were achieved respectively. Blood samples collection, clinical laboratory detection, electrocardiogram and echocardiography examinations were performed. …”
Publicado 2015
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8412por Semmler, Anna-Lena, Sacconi, Sabrina, Bach, J Elisa, Liebe, Claus, Bürmann, Jan, Kley, Rudolf A, Ferbert, Andreas, Anderheiden, Roland, Van den Bergh, Peter, Martin, Jean-Jacques, De Jonghe, Peter, Neuen-Jacob, Eva, Müller, Oliver, Deschauer, Marcus, Bergmann, Markus, Schröder, J Michael, Vorgerd, Matthias, Schulz, Jörg B, Weis, Joachim, Kress, Wolfram, Claeys, Kristl G“…METHODS: We screened a large cohort of 38 index patients with MFM for mutations in the nine thus far known causative genes using Sanger and next generation sequencing (NGS). We studied the clinical and histopathological characteristics in 38 index patients and five additional relatives (n = 43) and particularly focused on the associated multisystemic symptoms. …”
Publicado 2014
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8413por Tarailo-Graovac, Maja, Sinclair, Graham, Stockler-Ipsiroglu, Sylvia, Van Allen, Margot, Rozmus, Jacob, Shyr, Casper, Biancheri, Roberta, Oh, Tracey, Sayson, Bryan, Lafek, Mirafe, Ross, Colin J, Robinson, Wendy P, Wasserman, Wyeth W, Rossi, Andrea, van Karnebeek, Clara DM“…METHODS AND RESULTS: Here, we report on a new missense PIGA germline mutation [g.15342986C>T (p.S330N)] identified via WES followed by Sanger sequencing, in a Chinese male infant presenting with developmental arrest, infantile spasms, a pattern of lesion distribution on brain MRI resembling that typical of maple syrup urine disease, contractures, dysmorphism, elevated alkaline phosphatase, mixed hearing loss (a combination of conductive and sensorineural), liver dysfunction, mitochondrial complex I and V deficiency, and therapy-responsive dyslipidemia with confirmed lipoprotein lipase deficiency. …”
Publicado 2015
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8414por Ma, Zeng-Yi, Song, Zhi-Jian, Chen, Jian-Hua, Wang, Yong-Fei, Li, Shi-Qi, Zhou, Liang-Fu, Mao, Ying, Li, Yi-Ming, Hu, Rong-Gui, Zhang, Zhao-Yun, Ye, Hong-Ying, Shen, Ming, Shou, Xue-Fei, Li, Zhi-Qiang, Peng, Hong, Wang, Qing-Zhong, Zhou, Dai-Zhan, Qin, Xiao-Lan, Ji, Jue, Zheng, Jie, Chen, Hong, Wang, Yin, Geng, Dao-Ying, Tang, Wei-Jun, Fu, Chao-Wei, Shi, Zhi-Feng, Zhang, Yi-Chao, Ye, Zhao, He, Wen-Qiang, Zhang, Qi-Lin, Tang, Qi-Sheng, Xie, Rong, Shen, Jia-Wei, Wen, Zu-Jia, Zhou, Juan, Wang, Tao, Huang, Shan, Qiu, Hui-Jia, Qiao, Ni-Dan, Zhang, Yi, Pan, Li, Bao, Wei-Min, Liu, Ying-Chao, Huang, Chuan-Xin, Shi, Yong-Yong, Zhao, Yao“…We further evaluated somatic USP8 mutations in additional 258 PAs by Sanger sequencing. Targeted sequencing further identified a total of 17 types of USP8 variants in 67 of 108 ACTH-secreting PAs (62.04%). …”
Publicado 2015
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8415por Bertoli-Avella, Aida M., Gillis, Elisabeth, Morisaki, Hiroko, Verhagen, Judith M.A., de Graaf, Bianca M., van de Beek, Gerarda, Gallo, Elena, Kruithof, Boudewijn P.T., Venselaar, Hanka, Myers, Loretha A., Laga, Steven, Doyle, Alexander J., Oswald, Gretchen, van Cappellen, Gert W.A., Yamanaka, Itaru, van der Helm, Robert M., Beverloo, Berna, de Klein, Annelies, Pardo, Luba, Lammens, Martin, Evers, Christina, Devriendt, Koenraad, Dumoulein, Michiel, Timmermans, Janneke, Bruggenwirth, Hennie T., Verheijen, Frans, Rodrigus, Inez, Baynam, Gareth, Kempers, Marlies, Saenen, Johan, Van Craenenbroeck, Emeline M., Minatoya, Kenji, Matsukawa, Ritsu, Tsukube, Takuro, Kubo, Noriaki, Hofstra, Robert, Goumans, Marie Jose, Bekkers, Jos A., Roos-Hesselink, Jolien W., van de Laar, Ingrid M.B.H., Dietz, Harry C., Van Laer, Lut, Morisaki, Takayuki, Wessels, Marja W., Loeys, Bart L.“…METHODS: We combined genome-wide linkage analysis, exome sequencing, and candidate gene Sanger sequencing in a total of 470 index cases with thoracic aortic aneurysms. …”
Publicado 2015
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8416por Ellison, Gillian, Huang, Shuwen, Carr, Hedley, Wallace, Andrew, Ahdesmaki, Miika, Bhaskar, Sanjeev, Mills, John“…All mutations identified were confirmed where possible by Sanger sequencing or replication to eliminate the risk of false positive results due to artefacts within FFPE material. …”
Publicado 2015
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8417por Loux, Valentin, Mariadassou, Mahendra, Almeida, Sintia, Chiapello, Hélène, Hammani, Amal, Buratti, Julien, Gendrault, Annie, Barbe, Valérie, Aury, Jean-Marc, Deutsch, Stéphanie-Marie, Parayre, Sandrine, Madec, Marie-Noëlle, Chuat, Victoria, Jan, Gwenaël, Peterlongo, Pierre, Azevedo, Vasco, Le Loir, Yves, Falentin, Hélène“…Scaffolds were ordered by comparison with the complete reference genome CIRM-BIA1, obtained previously using traditional Sanger sequencing. Automatic functional annotation and manual curation were performed. …”
Publicado 2015
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8418por Moog, Ute, Bierhals, Tatjana, Brand, Kristina, Bautsch, Jan, Biskup, Saskia, Brune, Thomas, Denecke, Jonas, de Die-Smulders, Christine E, Evers, Christina, Hempel, Maja, Henneke, Marco, Yntema, Helger, Menten, Björn, Pietz, Joachim, Pfundt, Rolph, Schmidtke, Jörg, Steinemann, Doris, Stumpel, Constance T, Van Maldergem, Lionel, Kutsche, Kerstin“…METHODS: We identified a CASK alteration in 8 novel unrelated male patients by targeted Sanger sequencing, copy number analysis (MLPA and/or FISH) and array CGH. …”
Publicado 2015
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8419por Ho, Donald Ming-Tak, Shih, Chuan-Chi, Liang, Muh-Lii, Tsai, Chan-Yen, Hsieh, Tsung-Han, Tsai, Chin-Han, Lin, Shih-Chieh, Chang, Ting-Yu, Chao, Meng-En, Wang, Hsei-Wei, Wong, Tai-Tong“…It is therefore necessary to re-evaluate INI1(+), AT/RT-like cases. METHOD: Sanger sequencing, array CGH and mRNA microarray analyses were performed on PEBT samples to investigate their genomic landscapes. …”
Publicado 2015
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8420por Ribeiro, Beatriz Felicio, Miranda, Eliana C M, de Albuquerque, Dulcinéia Martins, Delamain, Márcia T, Oliveira-Duarte, Gislaine, Almeida, Maria Helena, Vergílio, Bruna, da Silveira, Rosana Antunes, Oliveira-Duarte, Vagner, Lorand-Metze, Irene, De Souza, Carmino A, Pagnano, Katia B B“…BCR-ABL1 mutations were analyzed by Sanger sequencing. RESULTS: We evaluated 25 chronic myeloid leukemia patients who had been previously treated with imatinib and a second tyrosine kinase inhibitor. …”
Publicado 2015
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