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8581por Mitsuhashi, Satomi, Ohori, Sachiko, Katoh, Kazutaka, Frith, Martin C., Matsumoto, Naomichi“…Breakpoint detection was very accurate; we usually see ~ 0 ± 1 base difference from Sanger sequencing-confirmed breakpoints. For one patient with two reciprocal chromosomal translocations, we find that the translocation points have complex rearrangements of multiple DNA fragments involving 5 chromosomes, which we could order and orient by an automatic algorithm, thereby fully reconstructing the rearrangement. …”
Publicado 2020
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8582por Rudenskaya, G. E., Kadnikova, V. A., Ryzhkova, O. P., Bessonova, L. A., Dadali, E. L., Guseva, D. S., Markova, T. V., Khmelkova, D. N., Polyakov, A. V.“…Molecular methods included massive parallel sequencing (MPS) of custom panel ‘spastic paraplegias’ with 62 target genes complemented by familial Sanger sequencing. One case was detected by the whole -exome sequencing. …”
Publicado 2020
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8583por Kuchboev, Abdurakhim, Sobirova, Khanifakhon, Karimova, Rokhatoy, Amirov, Oybek, von Samson-Himmelstjerna, Georg, Krücken, Jürgen“…After DNA isolation from morphologically identified specimens, PCRs targeting the ribosomal internal transcribed spacer 2 (ITS2) and mitochondrial cytochrome c oxidase subunit 1 (cox1) regions were conducted. After Sanger sequencing, maximum likelihood phylogenetic analyses and pairwise identities between sequences were calculated. …”
Publicado 2020
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8584por Escobar, Daniel F., Lucchi, Naomi W., Abdallah, Rispah, Valenzuela, María Teresa, Udhayakumar, Venkatachalam, Jercic, María Isabel, Chenet, Stella M.“…A photo-induced electron transfer fluorogenic primer real-time PCR (PET-PCR) was used to confirm the presence of malaria parasites in available blood samples. Sanger sequencing of drug resistance molecular markers (pfk13, pfcrt and pfmdr1) and microsatellite (MS) analysis were performed in confirmed Plasmodium falciparum samples and results were related to origin of infection. …”
Publicado 2020
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8585por Guan, Jing, Wang, Hongyang, Lan, Lan, Wu, Yusen, Chen, Guohui, Zhao, Cui, Wang, Dayong, Wang, Qiuju“…We used a targeted genomic enrichment platform to simultaneously capture exons, splicing sites, and immediate flanking intron sequences of 127 known deafness genes. Sanger sequencing was used to identify probands and their two parents segregating causative variants in the candidate gene. …”
Publicado 2020
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8586por Norton, Nadine, Crook, Julia E., Wang, Liwei, Olson, Janet E., Kachergus, Jennifer M., Serie, Daniel J., Necela, Brian M., Borgman, Paul G., Advani, Pooja P., Ray, Jordan C., Landolfo, Carolyn, Di Florio, Damian N., Hill, Anneliese R., Bruno, Katelyn A., Fairweather, DeLisa“…We further examined associated loci in the context of gene expression and rare coding variants using a TWAS approach in heart left ventricle and Sanger sequencing, respectively. Doxorubicin-induced apoptosis and cardiomyopathy was modeled in human iPSC-derived cardiomyocytes and endothelial cells and a mouse model, respectively, that were pre-treated with GsMTx-4, an inhibitor of TRPC6. …”
Publicado 2020
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8587por Wang, Hai-rong, Liu, Yan-qiu, He, Xue-lian, Sun, Jun, Zeng, Fan-wei, Yan, Cheng-bin, Li, Hao, Gao, Shu-yang, Yang, Yun“…The results were validated by Sanger sequencing and qPCR method in the family: the variant (c.937C > T, p.Arg313Ter) was in the maternal allele, and the delins was in the paternal allele. …”
Publicado 2020
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8588por Santoro, Claudia, Giugliano, Teresa, Bernardo, Pia, Palladino, Federica, Torella, Annalaura, del Vecchio Blanco, Francesca, Onore, Maria Elena, Carotenuto, Marco, Nigro, Vincenzo, Piluso, Giulio“…Family history suggested an X-linked condition and massively parallel sequencing of X-exome identified a novel RAB39B mutation (NM_171998.2:c.436_447del) in proband, his mother, and affected maternal uncle, subsequently validated by Sanger sequencing in these and other family members. …”
Publicado 2020
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8589por Stefani, Stefani, Kousiappa, Ioanna, Nicolaou, Nicoletta, Papathanasiou, Eleftherios S., Oulas, Anastasis, Fanis, Pavlos, Neocleous, Vassos, Phylactou, Leonidas A., Spyrou, George M., Papacostas, Savvas S.“…Trio-based analysis revealed a candidate polymorphism, p.Glu270del,in SYT14 (Synaptotagmin 14), in JME patients and their relatives presenting polyphasia. Sanger sequencing analysis in remaining participants showed no significant association. …”
Publicado 2020
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8590por Jacinto, Joana Gonçalves Pontes, Häfliger, Irene Monika, Letko, Anna, Drögemüller, Cord, Agerholm, Jørgen Steen“…Polymerase chain reaction analysis and Sanger sequencing confirmed the breakpoints of the deletion and its absence in the genomes of both parents. …”
Publicado 2020
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8591por Bootpetch, Tori C., Hafrén, Lena, Elling, Christina L., Baschal, Erin E., Manichaikul, Ani W., Pine, Harold S., Szeremeta, Wasyl, Scholes, Melissa A., Cass, Stephen P., Larson, Eric D., Chan, Kenny H., Ishaq, Rafaqat, Prager, Jeremy D., Shaikh, Rehan S., Gubbels, Samuel P., Yousaf, Ayesha, Wine, Todd M., Bamshad, Michael J., Yoon, Patricia J., Jenkins, Herman A., Nickerson, Deborah A., Streubel, Sven-Olrik, Friedman, Norman R., Frank, Daniel N., Einarsdottir, Elisabet, Kere, Juha, Riazuddin, Saima, Daly, Kathleen A., Leal, Suzanne M., Ryan, Allen F., Mattila, Petri S., Ahmed, Zubair M., Sale, Michele M., Chonmaitree, Tasnee, Santos-Cortez, Regie Lyn P.“…In order to potentially replicate previously reported associations between OM and PLG, exome and Sanger sequencing, RNA-sequencing of saliva and middle ear samples, 16S rRNA sequencing, molecular modeling, and statistical analyses including transmission disequilibrium tests (TDT) were performed in a multi-ethnic cohort of 718 families and simplex cases with OM. …”
Publicado 2020
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8592por Jung, Mareike, Schieck, Maximilian, Hofmann, Winfried, Tauscher, Marcel, Lentes, Jana, Bergmann, Anke, Stelter, Marie, Möricke, Anja, Alten, Julia, Schlegelberger, Brigitte, Schrappe, Martin, Zimmermann, Martin, Stanulla, Martin, Cario, Gunnar, Steinemann, Doris“…A customized TaqMan genotyping assay was used to screen for PAX5 (P80R). Sanger sequencing was used to confirm PAX5 (P80R)‐positive results as well as to screen for second variants in PAX5. …”
Publicado 2020
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8593“…Exonuclease digestion assay, agarose gel electrophoresis (AGE) and Sanger sequencing verified the potential of circ_0004771 being a biomarker. …”
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8594por Marakhonov, Andrey V., Mishina, Irina A., Kadyshev, Vitaly V., Repina, Svetlana A., Shurygina, Maria F., Shchagina, Olga A., Vasserman, Natalya N., Vasilyeva, Tatyana A., Kutsev, Sergey I., Zinchenko, Rena A.“…(Glu129*), in the NDP gene, which is associated with Norrie disease (OMIM #310600). Subsequent Sanger validation of the affected boy and his mother confirmed the identified substitution inherited in X-linked recessive mode. …”
Publicado 2020
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8595por Kose, Melis, Canda, Ebru, Kagnici, Mehtap, Aykut, Ayça, Adebali, Ogün, Durmaz, Asude, Bircan, Aylin, Diniz, Gulden, Eraslan, Cenk, Kose, Engin, Ünalp, Aycan, Yılmaz, Ünsal, Ozyilmaz, Berk, Özdemir, Taha Reşid, Atik, Tahir, Uçar, Sema Kalkan, McFarland, Robert, Taylor, Robert W., Brown, Garry K., Çoker, Mahmut, Özkınay, Ferda“…Their clinical, biochemical and molecular findings were recorded. 10/16 patients were diagnosed using whole-exome sequencing (WES), 4/16 by Sanger sequencing of SURF1, 1/16 via targeted exome sequencing and 1/16 patient with whole-genome sequencing (WGS). …”
Publicado 2020
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8596por Burimuah, Vitus, Sylverken, Augustina, Owusu, Michael, El-Duah, Philip, Yeboah, Richmond, Lamptey, Jones, Frimpong, Yaw Oppong, Agbenyega, Olivia, Folitse, Raphael, Emikpe, Ben, Tasiame, William, Owiredu, Eddie-Williams, Oppong, Samuel, Antwi, Christopher, Adu-Sarkodie, Yaw, Drosten, Christian“…BCoV detection was based on reverse transcriptase polymerase chain reaction. Sanger sequencing of the partial RNA-dependent RNA polymerase (RdRp) region for postive samples were done and nucleotide sequences were compared with homologous sequences from the GenBank. …”
Publicado 2020
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8597“…HPV-infected samples were genotyped by Sanger sequencing. Promoter methylation levels of 3 tumor suppressor genes were quantified by bisulfite-pyrosequencing of genomic DNA on the newest high-resolution PyroMark Q48 platform. …”
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8598por Margutti, Ana Vitoria Barban, Silva, Wilson Araújo, Garcia, Daniel Fantozzi, de Molfetta, Greice Andreotti, Marques, Adriana Aparecida, Amorim, Tatiana, Prazeres, Vânia Mesquita Gadelha, Boy da Silva, Raquel Tavares, Miura, Irene Kazue, Seda Neto, João, Santos, Emerson de Santana, Santos, Mara Lúcia Schmitz Ferreira, Lourenço, Charles Marques, Tonon, Tássia, Sperb-Ludwig, Fernanda, de Souza, Carolina Fischinger Moura, Schwartz, Ida Vanessa Döederlein, Camelo, José Simon“…It is a descriptive cross-sectional study with 21 MSUD patients involving molecular genotyping by Sanger sequencing. RESULTS: Eight new variants predicted as pathogenic were found between 30 variants (damaging and non-damaging) identified in the 21 patients analyzed: one in the BCKDHA gene (p.Tyr120Ter); five in the BCKDHB gene (p.Gly131Val, p.Glu146Glnfs * 13, p.Phe149Cysfs * 9, p.Cys207Phe, and p.Lys211Asn); and two in the DBT gene (p.Glu148Ter and p.Glu417Val). …”
Publicado 2020
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8599por Henrich, Birgit, Hammerlage, Stephanie, Scharf, Sebastian, Haberhausen, Diana, Fürnkranz, Ursula, Köhrer, Karl, Peitzmann, Lena, Fiori, Pier Luigi, Spergser, Joachim, Pfeffer, Klaus, Dilthey, Alexander T.“…Activity of ICEHo-I and -II was demonstrated by detection of circularized extrachromosomal forms of the elements through PCR and subsequent Sanger sequencing. CONCLUSIONS: Nanopore sequencing enabled the identification of mobile genetic elements and of ICEHo-II, a novel MICE element of M. hominis, whose phenotypic impact and potential impact on pathogenicity can now be elucidated. …”
Publicado 2020
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8600por Demeshko, Anastassia, Pennisi, David J., Narayan, Sushil, Gray, Stacy W., Brown, Matthew A., McInerney-Leo, Aideen M.“…BACKGROUND: Clinical whole exome sequencing was introduced in an Australian centre in 2017, as an alternative to Sanger sequencing. We aimed to identify predictors of cancer physicians’ somatic mutation test ordering behaviour. …”
Publicado 2020
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