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8821por Chaparro-Gutiérrez, Jenny J., Acevedo-Gutiérrez, Leidy Y., Mendell, Nicole L., Robayo-Sánchez, Laura N., Rodríguez-Durán, Arlex, Cortés-Vecino, Jesús A., Fernández, Diana, Ramírez-Hernández, Alejandro, Bouyer, Donald H.“…All products from conventional PCR were further purified and sequenced by the Sanger technique. Representative sequences of 18 Rickettsia species were downloaded from GenBank. …”
Publicado 2023
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8822FRI410 ESR1 Variants Reduce Estrogen Receptor Alpha Expression In Women With Unexplained Infertilitypor Roman, Robert A, Liu, Haitao, Chorich, Lynn Parson, Li, Yin, Hall, Janet Elizabeth, Diamond, Michael P, Korach, Kenneth Steven, Layman, Lawrence Clarke“…Methods: Clinically identified ESR1 variant plasmids were constructed using site-directed mutagenesis and confirmed by Sanger sequencing. HepG2 cells were transiently transfected with either empty vector, wild type (WT) ESR1, p.His6Tyr, p.Ser118Pro, p.Arg269Cys, p.Thr313Met, or p.Gln375His (ESR1 missense variant control) estrogen receptor variant expression plasmids using Lipofectamine 3000 transfection reagent. …”
Publicado 2023
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8823“…Deletions were detected using SALSA MLPA probemix kit P217-B2 IGF1R (MRC Holland, Amsterdam, the Netherlands) and single nucleotide variants were analyzed by sanger sequencing of whole exon (#21) and exon-intron boundaries. …”
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8824por Akiyama, Yutaro, Iwamoto, Noriko, Kamada, Keisuke, Yoshida, Atsushi, Osugi, Asami, Mitarai, Satoshi, Suzuki, Tetsuya, Yamamoto, Kei, Nagashima, Maki, Horai, Tetsuya, Ohmagari, Norio“…Neither the full-length erythromycin ribosome methyltransferase (erm)(41) gene nor the rrl or rpIV gene mutations were found by Sanger sequencing in the pre- and post-treatment strains. …”
Publicado 2023
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8825por Zhou, Ningxin, Huang, Enjiong, Guo, Xiaoxia, Xiong, Yiping, Xie, Jingwen, Cai, Tong, Du, Yutong, Wu, Qixing, Guo, Sihan, Han, Wanrong, Zhang, Hengduan, Xing, Dan, Zhao, Tongyan, Jiang, Yuting“…METHODS: CFAV used in this study was harvested from Aag2 cells and its complete genome sequence was obtained by polymerase chain reaction and rapid amplification of complementary DNA ends, followed by Sanger sequencing. Phylogenetic analysis of newly identified CFAV sequences and other sequences retrieved from GenBank was performed. …”
Publicado 2023
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8826por Xu, Peiwen, Wang, Lijuan, Li, Jing, Huang, Sexin, Gao, Ming, Kang, Ranran, Li, Jie, Xie, Hongqiang, Liu, Xiaowei, Yan, Junhao, Gao, Xuan, Gao, Yuan“…METHODS: ADPKD-related genes were detected by WES; Chromosomal karyotyping and Optical Genome Mapping (OGM) were used to detect structural variant; The genomic break-point locations and the abnormal splicing were detected by reverse transcription-PCR and Sanger sequencing; The karyomapping gene chip and Next-Generation Sequencing (NGS) were performed to screen aneuploidy and to distinguish the non-carrier embryos from the carrier embryos. …”
Publicado 2023
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8827por Lin, Li, Ye, Yuhong, Fu, Haidong, Gu, Weizhong, Zhao, Manli, Sun, Jingmiao, Cao, Zhongkai, Huang, Guoping, Xie, Yi, Liu, Fei, Li, Lu, Li, Qiuyu, Mao, Jianhua, Hu, Lidan“…METHODS: We screened out a novel mutation by using whole-exon sequencing in the SRNS cohort and verified it via Sanger sequencing. Conservative analysis and bioinformatic analysis were used to predict the pathogenicity of the mutation. …”
Publicado 2023
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8828por Su, Lingxuan, Mao, Haiyan, Sun, Yi, Yan, Hao, Ge, Qiong, Gong, Liming, Zhang, Yanjun“…Genotypes were processed using reverse transcription polymerase chain reaction and Sanger sequencing, while next-generation sequencing was used to generate a complete viral genome. …”
Publicado 2023
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8829por Li, Hongjun, Jiao, Wanju, Song, Jiyu, Wang, Jianqun, Chen, Guo, Li, Dan, Wang, Xiaojing, Bao, Banghe, Du, Xinyi, Cheng, Yang, Yang, Chunhui, Tong, Qiangsong, Zheng, Liduan“…METHODS: Circular RNAs (circRNAs) were validated by Sanger sequencing. Co-immunoprecipitation, mass spectrometry, and RNA sequencing assays were applied to explore protein interaction and target genes. …”
Publicado 2023
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8830por Phetkarl, Tanakorn, Fungwithaya, Punpichaya, Udompornprasith, Supak, Amendt, Jens, Sontigun, Narin“…Conventional PCR was used to screen for hemoprotozoan parasite DNA, followed by Sanger sequencing to identify the species. RESULTS: In total, 189 biting flies were collected, including four species of Stomoxys (Stomoxys bengalensis, Stomoxys calcitrans, Stomoxys indicus, and Stomoxys sitiens) and five species of tabanids (Atylotus cryptotaxis, Chrysops dispar, Tabanus megalops, Tabanus mesogaeus, and Tabanus rubidus). …”
Publicado 2023
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8831por Alkudmani, Zeina S., Alzailai, Aminah Ahmad, Aburisheh, Khaled H., Alshammary, Amal F., Ali Khan, Imran“…The three SNPs were identified in the study population (n = 200) using polymerase chain reaction (PCR), restriction enzymes for rs352140, and Sanger sequencing for rs187084 and rs5783836. Next, statistical analyses were performed using various software to determine the association between the SNPs and T2DM. rs187084 and rs5743836 were associated with an increased risk of T2DM development. rs187084 and rs5743836 allelic frequencies were associated with a 3.2 times increased risk of T2DM development (p < 0.05). …”
Publicado 2023
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8832por Lwande, Olivia Wesula, Näslund, Jonas, Sjödin, Andreas, Lantto, Rebecca, Luande, Verah Nafula, Bucht, Göran, Ahlm, Clas, Agwanda, Bernard, Obanda, Vincent, Evander, Magnus“…When using reverse transcriptase polymerase chain reaction (RT-PCR), Sanger sequencing and Twist Comprehensive Viral Research Panel (CVRP) (Twist Biosciences), all pools were found negative by RT-PCR when using genus specific primers targeting alphaviruses, orthobunyaviruses and virus specific primers towards o'nyong-nyong virus, chikungunya virus and Sindbis virus (previously reported to circulate in the region). …”
Publicado 2023
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8833por Zhao, Yubao, Chen, Kun, Yang, Hui, Zhang, Feng, Ding, Lu, Liu, Yan, Zhang, Le, Zhang, Yuchen, Wang, Huiliang, Deng, Yang“…METHODS: Five HLA-DR SNPs (rs3135363, rs9268644, rs35445101, rs24755213, and rs984778) were genotyped in 792 healthy controls, 586 chronic hepatitis B (CHB) patients, 536 liver cirrhosis (LC) patients, and 1500 HCC patients using quantitative PCR. Sanger sequencing was used to identify the HBV mutations. …”
Publicado 2023
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8834por Xu, Junhuan, Linning, Rob, Fellers, John, Dickinson, Matthew, Zhu, Wenhan, Antonov, Ivan, Joly, David L, Donaldson, Michael E, Eilam, Tamar, Anikster, Yehoshua, Banks, Travis, Munro, Sarah, Mayo, Michael, Wynhoven, Brian, Ali, Johar, Moore, Richard, McCallum, Brent, Borodovsky, Mark, Saville, Barry, Bakkeren, Guus“…To refine the EST database, we compared EST sequences by BLASTN to a set of 454 pyrosequencing-generated contigs and Sanger BAC-end sequences derived both from the Pt genome, and to ESTs and genome reads from wheat. …”
Publicado 2011
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8835por Blanca, José, Esteras, Cristina, Ziarsolo, Pello, Pérez, Daniel, Fernández-Pedrosa, Victoria, Collado, Carmen, RodrÃguez de Pablos, Raquel, Ballester, Alida, Roig, Cristina, Cañizares, Joaquín, Picó, Belén“…Recent advances in massively parallel sequencing have begun to allow the study of nucleotide diversity in this species. The Sanger method combined with medium-throughput 454 technology were used in a previous study to analyze the genetic diversity of germplasm representing 3 botanical varieties, yielding a collection of about 40,000 SNPs distributed in 14,000 unigenes. …”
Publicado 2012
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8836por Bishop-Lilly, Kimberly A, Plaut, Roger D, Chen, Peter E, Akmal, Arya, Willner, Kristin M, Butani, Amy, Dorsey, Shakia, Mokashi, Vishwesh, Mateczun, Alfred J, Chapman, Carol, George, Matroner, Luu, Truong, Read, Timothy D, Calendar, Richard, Stibitz, Scott, Sozhamannan, Shanmuga“…Eleven additional spontaneous mutants, isolated in two different genetic backgrounds, were screened by PCR followed by Sanger sequencing of the csaB gene. In each spontaneous mutant, we found either a non-synonymous substitution, a nonsense mutation, or a frame-shift mutation caused by single nucleotide polymorphisms or a 5 base pair insertion in csaB. …”
Publicado 2012
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8837por McMillan, Hugh J, Worthylake, Thea, Schwartzentruber, Jeremy, Gottlieb, Chloe C, Lawrence, Sarah E, MacKenzie, Alex, Beaulieu, Chandree L, Mooyer, Petra A W, Wanders, Ronald J A, Majewski, Jacek, Bulman, Dennis E, Geraghty, Michael T, Ferdinandusse, Sacha, Boycott, Kym M“…Compound heterozygous mutations were identified by exome sequencing and confirmed by Sanger sequencing within the dehydrogenase domain (c.101C>T; p.Ala34Val) and hydratase domain (c.1547T>C; p.Ile516Thr) of the 17β-hydroxysteroid dehydrogenase type 4 gene (HSD17B4). …”
Publicado 2012
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8838por Karnes, Jason H, Langaee, Taimour Y, McDonough, Caitrin W, Chang, Shin-Wen, Ramos, Miguel, Catlin Jr, James R, Casanova, Octavio E, Gong, Yan, Pepine, Carl J, Johnson, Julie A, Cooper-DeHoff, Rhonda M“…Controls, who were diabetes-free throughout the study, and type 2 diabetes cases, either prevalent or incident, were genotyped for IVS5-13insC using Taqman®, confirmed with Pyrosequencing and Sanger sequencing. For LD analysis, genotyping for eight additional HMGA1 single nucleotide polymorphisms (SNPs) was performed using the Illumina® HumanCVD BeadChip. …”
Publicado 2013
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8839por Schmidts, Miriam, Arts, Heleen H, Bongers, Ernie M H F, Yap, Zhimin, Oud, Machteld M, Antony, Dinu, Duijkers, Lonneke, Emes, Richard D, Stalker, Jim, Yntema, Jan-Bart L, Plagnol, Vincent, Hoischen, Alexander, Gilissen, Christian, Forsythe, Elisabeth, Lausch, Ekkehart, Veltman, Joris A, Roeleveld, Nel, Superti-Furga, Andrea, Kutkowska-Kazmierczak, Anna, Kamsteeg, Erik-Jan, Elçioğlu, Nursel, van Maarle, Merel C, Graul-Neumann, Luitgard M, Devriendt, Koenraad, Smithson, Sarah F, Wellesley, Diana, Verbeek, Nienke E, Hennekam, Raoul C M, Kayserili, Hulya, Scambler, Peter J, Beales, Philip L, Knoers, Nine VAM, Roepman, Ronald, Mitchison, Hannah M“…AIMS AND METHODS: To determine the contribution to JATD we screened DYNC2H1 in 71 JATD patients JATD patients combining SNP mapping, Sanger sequencing and exome sequencing. RESULTS AND CONCLUSIONS: We detected 34 DYNC2H1 mutations in 29/71 (41%) patients from 19/57 families (33%), showing it as a major cause of JATD especially in Northern European patients. …”
Publicado 2013
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8840por Teo, Zhi L, Park, Daniel J, Provenzano, Elena, Chatfield, Catherine A, Odefrey, Fabrice A, Nguyen-Dumont, Tu, Dowty, James G, Hopper, John L, Winship, Ingrid, Goldgar, David E, Southey, Melissa C“…The coding and flanking intronic regions of PALB2 in DNA extracted from blood were screened using high-resolution melt curve analysis with Sanger sequencing confirmation. Where possible, relatives of women found to carry PALB2 mutations were genotyped for the family-specific mutation, mutant transcripts were characterised and breast tumours arising in mutation carriers were recalled and reviewed. …”
Publicado 2013
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