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8841por Foley, A. Reghan, Menezes, Manoj P., Pandraud, Amelie, Gonzalez, Michael A., Al-Odaib, Ahmad, Abrams, Alexander J., Sugano, Kumiko, Yonezawa, Atsushi, Manzur, Adnan Y., Burns, Joshua, Hughes, Imelda, McCullagh, B. Gary, Jungbluth, Heinz, Lim, Ming J., Lin, Jean-Pierre, Megarbane, Andre, Urtizberea, J. Andoni, Shah, Ayaz H., Antony, Jayne, Webster, Richard, Broomfield, Alexander, Ng, Joanne, Mathew, Ann A., O’Byrne, James J., Forman, Eva, Scoto, Mariacristina, Prasad, Manish, O’Brien, Katherine, Olpin, Simon, Oppenheim, Marcus, Hargreaves, Iain, Land, John M., Wang, Min X., Carpenter, Kevin, Horvath, Rita, Straub, Volker, Lek, Monkol, Gold, Wendy, Farrell, Michael O., Brandner, Sebastian, Phadke, Rahul, Matsubara, Kazuo, McGarvey, Michael L., Scherer, Steven S., Baxter, Peter S., King, Mary D., Clayton, Peter, Rahman, Shamima, Reilly, Mary M., Ouvrier, Robert A., Christodoulou, John, Züchner, Stephan, Muntoni, Francesco, Houlden, Henry“…We used both exome and Sanger sequencing to identify SLC52A2 mutations in patients presenting with cranial neuropathies and sensorimotor neuropathy with or without respiratory insufficiency. …”
Publicado 2014
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8842por Tiwari, Vijay K, Wang, Shichen, Sehgal, Sunish, Vrána, Jan, Friebe, Bernd, Kubaláková, Marie, Chhuneja, Praveen, Doležel, Jaroslav, Akhunov, Eduard, Kalia, Bhanu, Sabir, Jamal, Gill, Bikram S“…Randomly selected samples of 59 5M(g)S-specific SNPs were tested (44 by KASPar assay and 15 by Sanger sequencing) and 84% were validated. Of the selected SNPs, 97% mapped to a chromosome 5M(g) addition to wheat (the source of t5M(g)S), and 94% to 5M(g) introgressed from a different accession of Ae. geniculata substituting for chromosome 5D of wheat. …”
Publicado 2014
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8843por Zimin, Aleksey V, Cornish, Adam S, Maudhoo, Mnirnal D, Gibbs, Robert M, Zhang, Xiongfei, Pandey, Sanjit, Meehan, Daniel T, Wipfler, Kristin, Bosinger, Steven E, Johnson, Zachary P, Tharp, Gregory K, Marçais, Guillaume, Roberts, Michael, Ferguson, Betsy, Fox, Howard S, Treangen, Todd, Salzberg, Steven L, Yorke, James A, Norgren,, Robert B“…RESULTS: We report a new de novo assembly of the rhesus macaque genome (MacaM) that incorporates both the original Sanger sequences used to assemble rheMac2 and new Illumina sequences from the same animal. …”
Publicado 2014
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8844por Damiola, Francesca, Pertesi, Maroulio, Oliver, Javier, Le Calvez-Kelm, Florence, Voegele, Catherine, Young, Erin L, Robinot, Nivonirina, Forey, Nathalie, Durand, Geoffroy, Vallée, Maxime P, Tao, Kayoko, Roane, Terrell C, Williams, Gareth J, Hopper, John L, Southey, Melissa C, Andrulis, Irene L, John, Esther M, Goldgar, David E, Lesueur, Fabienne, Tavtigian, Sean V“…METHODS: Using high-resolution melt curve analysis followed by Sanger sequencing, we mutation screened the coding exons and proximal splice junction regions of the MRN genes in 1,313 early-onset breast cancer cases and 1,123 population controls. …”
Publicado 2014
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8845por Lin, Fujun, Bian, Fan, Zou, Jun, Wu, Xiangru, Shan, Jianping, Lu, Wei, Yao, Yao, Jiang, Gengru, Gale, Daniel Philip“…Whole exome sequencing (WES) was performed in the index case from each family and co-segregation of candidate pathogenic mutations was tested by Sanger sequencing. RESULTS: We identified COL4A4 missense variants [c.G2636A (p.Gly879Glu) and c.C4715T (p.Pro1572Leu)] in the 21-year-old male proband from family 1, who had been diagnosed with mesangial proliferative nephropathy at age 14. …”
Publicado 2014
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8846por Rudd, Meghan L, Mohamed, Hassan, Price, Jessica C, O’Hara, Andrea J, Le Gallo, Matthieu, Urick, Mary Ellen, Cruz, Pedro, Zhang, Suiyuan, Hansen, Nancy F, Godwin, Andrew K, Sgroi, Dennis C, Wolfsberg, Tyra G, Mullikin, James C, Merino, Maria J, Bell, Daphne W“…METHODS: In a mutation discovery screen, we PCR amplified and Sanger sequenced the exons encoding the catalytic domains of 86 tyrosine kinases from 24 serous, 11 clear cell, and 5 mixed histology ECs. …”
Publicado 2014
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8847por Salih, Mohamed A M, Fakiola, Michaela, Abdelraheem, Mohamed H, Younis, Brima M, Musa, Ahmed M, ElHassan, Ahmed M, Blackwell, Jenefer M, Ibrahim, Muntaser E, Mohamed, Hiba S“…This study aimed to identify putative functional polymorphisms in the IFNGR1 gene, and to determine whether differences in expression of interferon-γ (IFNG) and IFNGR1 at the RNA level are associated with pathogenesis of VL and/or PKDL in Sudan. METHODS: Sanger sequencing was used to re-sequence 841 bp of upstream, exon1 and intron1 of the IFNGR1 gene in DNA from 30 PKDL patients. …”
Publicado 2014
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8848por Méndez-Vidal, Cristina, Bravo-Gil, Nereida, González-del Pozo, María, Vela-Boza, Alicia, Dopazo, Joaquín, Borrego, Salud, Antiñolo, Guillermo“…RESULTS: Exome sequencing of the index patient resulted in the identification of the homozygous BBS1 p.M390R mutation. Sanger sequencing of additional members of the family showed lack of co-segregation of the p.M390R variant in some individuals. …”
Publicado 2014
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8849por Tone, Alicia A, McConechy, Melissa K, Yang, Winnie, Ding, Jiarui, Yip, Stephen, Kong, Esther, Wong, Kwong-Kwok, Gershenson, David M, Mackay, Helen, Shah, Sohrab, Gilks, Blake, Tinker, Anna V, Clarke, Blaise, McAlpine, Jessica N, Huntsman, David“…Mutational analysis was performed using the Ion Torrent AmpliSeq(TM) Cancer Panel, with targeted validation using Fluidigm-MiSeq, Sanger sequencing and/or Raindance Raindrop digital PCR. …”
Publicado 2014
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8850por Campton, Daniel E, Ramirez, Arturo B, Nordberg, Joshua J, Drovetto, Nick, Clein, Alisa C, Varshavskaya, Paulina, Friemel, Barry H, Quarre, Steve, Breman, Amy, Dorschner, Michael, Blau, Sibel, Blau, C Anthony, Sabath, Daniel E, Stilwell, Jackie L, Kaldjian, Eric P“…Individual mCTCs were removed from slides using a single-cell retrieval device (CytePicker™) for whole genome amplification and subsequent analysis by PCR and Sanger sequencing, whole exome sequencing, or array-based comparative genomic hybridization. …”
Publicado 2015
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8851por King, Robert, Urban, Martin, Hammond-Kosack, Michael C. U., Hassani-Pak, Keywan, Hammond-Kosack, Kim E.“…Completion was achieved by combining (a) the BROAD Sanger sequenced draft, with (b) the gene predictions from Munich Information Services for Protein Sequences (MIPS) v3.2, with (c) de novo whole-genome shotgun re-sequencing, (d) re-annotation of the gene models using RNA-seq evidence and Fgenesh, Snap, GeneMark and Augustus prediction algorithms, followed by (e) manual curation. …”
Publicado 2015
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8852por Münz, Márton, Ruark, Elise, Renwick, Anthony, Ramsay, Emma, Clarke, Matthew, Mahamdallie, Shazia, Cloke, Victoria, Seal, Sheila, Strydom, Ann, Lunter, Gerton, Rahman, Nazneen“…CAVA annotation of 50 BRCA1/BRCA2 gene mutations from a clinical pipeline gave 100 % concordance with Sanger data; only 8/25 BRCA2 mutations were correctly clinically annotated by other tools. …”
Publicado 2015
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8853por Jiang, Lichun, Liang, Xiaofang, Li, Yumei, Wang, Jing, Zaneveld, Jacques Eric, Wang, Hui, Xu, Shan, Wang, Keqing, Wang, Binbin, Chen, Rui, Sui, Ruifang“…We utilized customized panel and whole exome sequencing, variant analysis, Sanger validation and segregation tests to find disease causing mutations in these families. …”
Publicado 2015
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8854por Huo, Zhen, Wu, Huanwen, Li, Ji, Li, Shanqing, Wu, Shafei, Liu, Yuanyuan, Luo, Yufeng, Cao, Jinling, Zeng, Xuan, Liang, Zhiyong“…Mutation profiling of the EGFR, KRAS, BRAF, ALK, PIK3CA, PDGFRA, and DDR2 genes were carried out using next-generation sequencing (NGS), Sanger sequencing, and quantitative polymerase chain reaction (QPCR) in 9 successfully amplified cases. …”
Publicado 2015
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8855por Todd, Emily J., Yau, Kyle S., Ong, Royston, Slee, Jennie, McGillivray, George, Barnett, Christopher P., Haliloglu, Goknur, Talim, Beril, Akcoren, Zuhal, Kariminejad, Ariana, Cairns, Anita, Clarke, Nigel F., Freckmann, Mary-Louise, Romero, Norma B., Williams, Denise, Sewry, Caroline A, Colley, Alison, Ryan, Monique M., Kiraly-Borri, Cathy, Sivadorai, Padma, Allcock, Richard J.N., Beeson, David, Maxwell, Susan, Davis, Mark R., Laing, Nigel G., Ravenscroft, Gianina“…Candidate disease-causing variants were investigated and confirmed using Sanger sequencing. Some of the cases within this cohort study have been published previously as separate studies. …”
Publicado 2015
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8856por Hoffman, Lindsey M., DeWire, Mariko, Ryall, Scott, Buczkowicz, Pawel, Leach, James, Miles, Lili, Ramani, Arun, Brudno, Michael, Kumar, Shiva Senthil, Drissi, Rachid, Dexheimer, Phillip, Salloum, Ralph, Chow, Lionel, Hummel, Trent, Stevenson, Charles, Lu, Q. Richard, Jones, Blaise, Witte, David, Aronow, Bruce, Hawkins, Cynthia E., Fouladi, Maryam“…Validation was performed using Sanger sequencing, Droplet Digital polymerase-chain reaction, immunohistochemistry, and fluorescent in-situ hybridization. …”
Publicado 2016
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8857por Berger, Kristi L., Sarrazin, Christoph, Nelson, David R., Scherer, Joseph, Sha, Nanshi, Marquis, Martin, Côté-Martin, Alexandra, Vinisko, Richard, Stern, Jerry O., Mensa, Federico J., Kukolj, George“…METHODS: HCV NS3/4A and NS5B population sequencing (Sanger method) was performed on all baseline plasma samples (n = 1425 NS3; n = 1556 NS5B) and on post-baseline plasma samples from patients with virologic failure (n = 113 GT-1a; n = 221 GT-1b). …”
Publicado 2016
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8858por Yang, Li, Tang, Yang, Xiao, Fang’Xi, Xiong, Jie, Shen, Ke’Feng, Liu, Ya’Nan, Zhang, Wei, Zheng, Li’Chang, Zhou, Jian’Feng, Xiao, Min“…Then SNP rs2303116 of STXBP2 genotyping was performed by Sanger sequencing method on samples from 24 patients with HLH and 182 normal controls. …”
Publicado 2016
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8859por Heo, Won Il, Park, Kui Young, Jin, Taewon, Lee, Mi-Kyung, Kim, MinJeong, Choi, Eung Ho, Kim, Hae-Suk, Bae, Jung Min, Moon, Nam Ju, Seo, Seong Jun“…Additional validation was performed in 112 AD patients and 61 controls using Sanger sequencing. RESULTS: We focused on both common functional variants with a minor allele frequency higher than 1% and rare variants with a minor allele frequency less than 1%. …”
Publicado 2017
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8860por Sheikh, Ahmad Farajzadeh, Khosravi, Azar D., Goodarzi, Hamed, Nashibi, Roohangiz, Teimouri, Alireaza, Motamedfar, Azim, Ranjbar, Reza, Afzalzadeh, Sara, Cyrus, Mehrandokht, Hashemzadeh, Mohammad“…A total of 21 samples amplified the 16S rRNA-PCR product. Sanger sequencing of the PCR products identified the following bacteriological agents: Mycobacterium tuberculosis (n = 9; 42.9%), Staphylococcus aureus (n = 6; 28.5%), Mycobacterium abscessus (n = 5; 23.8%), and Mycobacterium chelonae (n = 1; 4.8%). 36 samples displayed no visible 16S rRNA PCR signal, which suggested that non-bacterial infectious agents (e.g., fungi) or non-infectious processes (e.g., inflammatory, or neoplastic) may be responsible for some of these cases. …”
Publicado 2017
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