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8861por Sho, Shonan, Court, Colin M., Winograd, Paul, Lee, Sangjun, Hou, Shuang, Graeber, Thomas G., Tseng, Hsian-Rong, Tomlinson, James S.“…WGA products were subjected to Sanger sequencing, array comparative genomic hybridization (aCGH) and next generation sequencing (NGS) to evaluate their performances in respective downstream analyses providing validation of the QC-score. …”
Publicado 2017
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8862por Heppt, Markus V., Siepmann, Timo, Engel, Jutta, Schubert-Fritschle, Gabriele, Eckel, Renate, Mirlach, Laura, Kirchner, Thomas, Jung, Andreas, Gesierich, Anja, Ruzicka, Thomas, Flaig, Michael J., Berking, Carola“…METHODS: The mutational status of BRAF (exon 15) and NRAS (exon 2 and 3) was determined in melanoma samples of 217 patients with pyrosequencing and Sanger sequencing. The genotypes were correlated with clinical outcomes and pathologic features of the primary tumors. …”
Publicado 2017
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8863por Gupta, Shashank, Chaurasia, Amit, Pathak, Ekta, Mishra, Rajeev, Chaudhry, Vidya Nair, Chaudhry, Prashaant, Mukherjee, Ashim, Mutsuddi, Mousumi“…Candidates after data analysis were screened by segregation analysis and Sanger sequencing. Considering recessive inheritance and consanguinity in the pedigree, we attempted to map large loci homozygous by descent in the genome of patients using exome sequencing variants. …”
Publicado 2017
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8864por Uysal, Fahrettin, Turkgenc, Burcu, Toksoy, Guven, Bostan, Ozlem M., Evke, Elif, Uyguner, Oya, Yakicier, Cengiz, Kayserili, Hulya, Cil, Ergun, Temel, Sehime G.“…As a result of DNA sequencing analysis of KCNQ1 and KCNE1 genes, a compound heterozygosity for two mutations had been detected in KCNQ1 gene in case 2: a maternally derived c.477 + 1G > A splice site mutation and a paternally derived c.520C > T (p.Arg174Cys) missense mutation. Sanger sequencing of KCNQ1 and KCNE1 genes displayed a homozygous c.1097G > A (p.Arg366Gln) mutation in KCNQ1 gene in case 3. β-blocker therapy was initiated to all the index subjects. …”
Publicado 2017
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8865por Chingandu, Nomatter, Kouakou, Koffie, Aka, Romain, Ameyaw, George, Gutierrez, Osman A., Herrmann, Hans-Werner, Brown, Judith K.“…METHODS: The DNA virome was determined from symptomatic cacao samples using Illumina-Hi Seq, and sequence accuracy was verified by Sanger sequencing. The resultant 14, and seven previously known, full-length badnaviral genomic and RT-RNase H sequences were analyzed by pairwise distance analysis to resolve species relationships, and by Maximum likelihood (ML) to reconstruct phylogenetic relationships. …”
Publicado 2017
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8866por Moisés, Jorge, Navarro, Alfons, Santasusagna, Sandra, Viñolas, Nuria, Molins, Laureano, Ramirez, José, Osorio, Jeisson, Saco, Adela, Castellano, Joan Josep, Muñoz, Carmen, Morales, Sara, Monzó, Mariano, Marrades, Ramón María“…TP53, KRAS, and EGFR mutations were assessed by Sanger sequencing. RESULTS: NKX2–1 expression was upregulated in never-smokers (P = 0.017), ADK (P < 0.0001) and patients with wild-type TP53 (P = 0.001). …”
Publicado 2017
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8867por Yeung, Kit San, Tso, Winnie Wan Yee, Ip, Janice Jing Kun, Mak, Christopher Chun Yu, Leung, Gordon Ka Chun, Tsang, Mandy Ho Yin, Ying, Dingge, Pei, Steven Lim Cho, Lee, So Lun, Yang, Wanling, Chung, Brian Hon-Yin“…Germline mutations were validated by Sanger sequencing, whereas somatic mutations were validated by droplet digital PCR. …”
Publicado 2017
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8868por Hemadou, Audrey, Giudicelli, Véronique, Smith, Melissa Laird, Lefranc, Marie-Paule, Duroux, Patrice, Kossida, Sofia, Heiner, Cheryl, Hepler, N. Lance, Kuijpers, John, Groppi, Alexis, Korlach, Jonas, Mondon, Philippe, Ottones, Florence, Jacobin-Valat, Marie-Josée, Laroche-Traineau, Jeanny, Clofent-Sanchez, Gisèle“…In order to further validate the ability of SMRT sequencing to provide high quality, full-length scFv sequences, we tracked the reads of an scFv-phage clone P3 previously identified by biological assays and Sanger sequencing. Sixty P3 reads showed 100% identity with the full-length scFv of 767 bp, 53 of them covering the whole insert of 977 bp, which encompassed the primer sequences. …”
Publicado 2017
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8869por Kojima, Yuichiro, Hirotsu, Yosuke, Omata, Wataru, Sugimori, Makoto, Takaoka, Shinya, Ashizawa, Hiroshi, Nakagomi, Keiko, Yoshimura, Dai, Hosoda, Kenji, Suzuki, Yoji, Mochizuki, Hitoshi, Omata, Masao“…Genotyping for the NUDT15 and TPMT genes was performed using Custom TaqMan SNP genotyping assays or Sanger sequencing. The changes in white blood cell (WBC) count, mean corpuscular volume (MCV), platelet count, hemoglobin, CRP, amylase, albumin, AST, ALT, and ESR were evaluated. …”
Publicado 2018
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8870por Yebra, Gonzalo, Frampton, Dan, Gallo Cassarino, Tiziano, Raffle, Jade, Hubb, Jonathan, Ferns, R. Bridget, Waters, Laura, Tong, C. Y. William, Kozlakidis, Zisis, Hayward, Andrew, Kellam, Paul, Pillay, Deenan, Clark, Duncan, Nastouli, Eleni, Leigh Brown, Andrew J.“…The pipeline was applied to 420 HIV samples collected at University College London Hospitals NHS Trust and Barts Health NHS Trust (London) and sequenced using an Illumina MiSeq at the Wellcome Trust Sanger Institute (Cambridge). Consensus genomes were generated and subtyped using COMET, and unique recombinants were studied with jpHMM and SimPlot. …”
Publicado 2018
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8871por Han, Seung Yub, Antoine, Alesia, Howard, David, Chang, Bryant, Chang, Woo Sung, Slein, Matthew, Deikus, Gintaras, Kossida, Sofia, Duroux, Patrice, Lefranc, Marie-Paule, Sebra, Robert P., Smith, Melissa L., Fofana, Ismael Ben F.“…Our previous screening relied on Sanger sequencing, which was inefficient and generated only a few dozen sequences. …”
Publicado 2018
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8872por Asadollahi, Reza, Strauss, Justin E, Zenker, Martin, Beuing, Oliver, Edvardson, Simon, Elpeleg, Orly, Strom, Tim M, Joset, Pascal, Niedrist, Dunja, Otte, Christine, Oneda, Beatrice, Boonsawat, Paranchai, Azzarello-Burri, Silvia, Bartholdi, Deborah, Papik, Michael, Zweier, Markus, Haas, Cordula, Ekici, Arif B, Baumer, Alessandra, Boltshauser, Eugen, Steindl, Katharina, Nothnagel, Michael, Schinzel, Albert, Stoeckli, Esther T, Rauch, Anita“…To evaluate the specificity and etiology of ACLS craniofacial features, we performed whole exome or targeted Sanger sequencing in patients with the aforementioned overlapping craniofacial appearance but variable additional ciliopathy features followed by functional studies. …”
Publicado 2018
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8873por Vazquez, Neftali, Sanchez, Lilia, Marks, Rebecca, Martinez, Eduardo, Fanniel, Victor, Lopez, Alma, Salinas, Andrea, Flores, Itzel, Hirschmann, Jesse, Gilkerson, Robert, Schuenzel, Erin, Dearth, Robert, Halaby, Reginald, Innis-Whitehouse, Wendy, Keniry, Megan“…Selection of mutants in mammalian cell lines with G418 (Geneticin) combined with several screening methods: western blot analysis, polymerase chain reaction, and Sanger sequencing resulted in streamlined mutant isolation. …”
Publicado 2018
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8874por Luo, Aixiang, Cheng, Dehua, Yuan, Shimin, Li, Haiyu, Du, Juan, Zhang, Yang, Yang, Chuanchun, Lin, Ge, Zhang, Wenyong, Tan, Yue-Qiu“…The Levicare analysis pipeline of whole-genome sequencing (WGS) further demonstrated that a segment of 1q43-q44 was inserted at 14q23.1 in the unaffected mother, which indicated that the mother was a carrier of a 46,XX,ins(14;1)(q23.1;q43q44) insertional translocation. Moreover, Sanger sequencing was used to assist the mapping of the breakpoints and the final validation of those breakpoints. …”
Publicado 2018
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8875por Wang, Jinyan, Yang, Yuwen, Jin, Lamei, Ling, Xitie, Liu, Tingli, Chen, Tianzi, Ji, Yinghua, Yu, Wengui, Zhang, Baolong“…We validated the circRNAs by both PCR and Sanger sequencing using divergent primers, and found that most of circRNAs were derived from the exons of protein coding genes. …”
Publicado 2018
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8876por Hamdi, Yosr, Boujemaa, Maroua, Ben Rekaya, Mariem, Ben Hamda, Cherif, Mighri, Najah, El Benna, Houda, Mejri, Nesrine, Labidi, Soumaya, Daoud, Nouha, Naouali, Chokri, Messaoud, Olfa, Chargui, Mariem, Ghedira, Kais, Boubaker, Mohamed Samir, Mrad, Ridha, Boussen, Hamouda, Abdelhak, Sonia“…Relevant variants identified in BC-TN-F001 have been confirmed using Sanger sequencing. Then, we conducted an integrative analysis by combining our results with those from other WES studies in order to figure out the genetic transmission model of the newly identified genes. …”
Publicado 2018
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8877por Foley, Julie F., Phadke, Dhiral P., Hardy, Owen, Hardy, Sara, Miller, Victor, Madan, Anup, Howard, Kellie, Kruse, Kimberly, Lord, Cara, Ramaiahgari, Sreenivasa, Solomon, Gregory G., Shah, Ruchir R., Pandiri, Arun R., Herbert, Ronald A., Sills, Robert C., Merrick, B. Alex“…We report high performance metrics from exome sequencing of our probe set and Sanger validation of annotated, highly relevant, cancer gene mutations as cataloged in the human COSMIC database, in addition to several exonic variants in cancer-related genes. …”
Publicado 2018
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8878por Lu, Jingru, Zhao, Xiangzhong, Paiardini, Alessandro, Lang, Yanhua, Bottillo, Irene, Shao, Leping“…To make a definite diagnosis, we use whole-exome sequencing to identify the disease-causing mutations and Sanger sequencing to confirm the mutation co-segregation in the family. …”
Publicado 2018
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8879por Minosse, Claudia, Selleri, Marina, Giombini, Emanuela, Bartolini, Barbara, Capobianchi, Maria Rosaria, Cerilli, Stefano, Loiacono, Laura, Taibi, Chiara, D’Offizi, Gianpiero, McPhee, Fiona, Garbuglia, AnnaRosa“…PATIENTS AND METHODS: Available plasma samples from HCV GT4-infected patients treated with different DAA regimens were analyzed at baseline and after treatment failure, where applicable. Sanger sequencing of patient-derived NS5A and NS5B regions was performed on all available samples, while ultradeep pyrosequencing (UDPS) of NS5A and NS5B regions was performed only on samples from treatment failures at different time points. …”
Publicado 2018
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8880“…METHODS: DNA extracted from 142 UM and matched blood samples was sequenced using Sanger or next generation sequencing to identify BAP1 gene mutations. …”
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