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441por Hinrichs, A. S., Karolchik, D., Baertsch, R., Barber, G. P., Bejerano, G., Clawson, H., Diekhans, M., Furey, T. S., Harte, R. A., Hsu, F., Hillman-Jackson, J., Kuhn, R. M., Pedersen, J. S., Pohl, A., Raney, B. J., Rosenbloom, K. R., Siepel, A., Smith, K. E., Sugnet, C. W., Sultan-Qurraie, A., Thomas, D. J., Trumbower, H., Weber, R. J., Weirauch, M., Zweig, A. S., Haussler, D., Kent, W. J.“…The University of California Santa Cruz Genome Browser Database (GBD) contains sequence and annotation data for the genomes of about a dozen vertebrate species and several major model organisms. …”
Publicado 2006
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442por Kuhn, R. M., Karolchik, D., Zweig, A. S., Trumbower, H., Thomas, D. J., Thakkapallayil, A., Sugnet, C. W., Stanke, M., Smith, K. E., Siepel, A., Rosenbloom, K. R., Rhead, B., Raney, B. J., Pohl, A., Pedersen, J. S., Hsu, F., Hinrichs, A. S., Harte, R. A., Diekhans, M., Clawson, H., Bejerano, G., Barber, G. P., Baertsch, R., Haussler, D., Kent, W. J.“…The University of California, Santa Cruz Genome Browser Database contains, as of September 2006, sequence and annotation data for the genomes of 13 vertebrate and 19 invertebrate species. …”
Publicado 2007
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443por Joya, Xavier, Gomez-Culebras, Mario, Callejón, Alicia, Friguls, Bibiana, Puig, Carme, Ortigosa, Sandra, Morini, Luca, Garcia-Algar, Oscar, Vall, Oriol“…In 2007, 347 mother-infant dyads were included from the Hospital La Candelaria, Santa Cruz de Tenerife, Canary Islands (Spain). Data on socioeconomic characteristics and on substance misuse during pregnancy were collected using a structured questionnaire. …”
Publicado 2012
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444por Rosenbloom, Kate R., Sloan, Cricket A., Malladi, Venkat S., Dreszer, Timothy R., Learned, Katrina, Kirkup, Vanessa M., Wong, Matthew C., Maddren, Morgan, Fang, Ruihua, Heitner, Steven G., Lee, Brian T., Barber, Galt P., Harte, Rachel A., Diekhans, Mark, Long, Jeffrey C., Wilder, Steven P., Zweig, Ann S., Karolchik, Donna, Kuhn, Robert M., Haussler, David, Kent, W. James“…The University of California, Santa Cruz, makes this data available on the public Genome Browser http://genome.ucsc.edu for visual browsing and data mining. …”
Publicado 2013
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445por Tang, Zhenya, Berlin, Dorit S., Toji, Lorraine, Toruner, Gokce A., Beiswanger, Christine, Kulkarni, Shashikant, Martin, Christa L., Emanuel, Beverly S., Christman, Michael, Gerry, Norman P.“…A database containing detailed cytogenetic and genomic information for these cell lines has been constructed and is freely available through several sources, such as the NIGMS Repository website and the University of California at Santa Cruz Genome Browser. As additional cell lines are analyzed and subsequently added into it, the database will be maintained dynamically.…”
Publicado 2013
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446“…The endangered Ohlone tiger beetle (Cicindela ohlone) occurs in a 24-km(2) area in Santa Cruz County, California. The once larger metapopulation now consists of subpopulations inhabiting five patches of coastal prairie where it depends on bare ground for mating, foraging, and oviposition. …”
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447por Raney, Brian J., Dreszer, Timothy R., Barber, Galt P., Clawson, Hiram, Fujita, Pauline A., Wang, Ting, Nguyen, Ngan, Paten, Benedict, Zweig, Ann S., Karolchik, Donna, Kent, W. James“…Hub datasets can be organized, configured and fully integrated into the University of California Santa Cruz (UCSC) Genome Browser and accessed through the familiar browser interface. …”
Publicado 2014
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448“…Hapalops, a smaller-sized and early sloth of the Megatheroidea, appeared in the middle Miocene Santa Cruz formation of Argentina. This genus is part of the group from which later, larger megatheroids arose, i.e., Nothrotheriops and Megatherium. …”
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449“…In the databases of the University of California, Santa Cruz (UCSC) and Match online, two common transcription factors were identified for miR-150 and p27: Cooperates with myogenic proteins 1 (COMP1) and hepatocyte nuclear factor-4 (HNF-4). …”
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450por Baroni, Marina Pegoraro, Sanchis, Geronimo José Bouzas, de Assis, Sanderson José Costa, dos Santos, Rafael Gomes, Pereira, Silvana Alves, Sousa, Klayton Galante, Lopes, Johnnatas Mikael“…METHODS: This is a cross-sectional and quantitative study with stratified random selection of public school students in the city of Santa Cruz, Brazil. The presence of scoliosis was examined, as well as the flexibility of the posterior muscle chain, socioeconomic characteristics, anthropometry, lifestyle habits, sexual maturation, and ergonomics of school furniture. …”
Publicado 2015
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451por Forsyth, Colin J.“…This study examines patient strategies for coping with CD in the department of Santa Cruz, Bolivia. METHODOLOGY: In this ethnographic study, semistructured interviews took place from March-June 2013 with 63 patients who had previously tested positive for CD. …”
Publicado 2017
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452“…In our motivating data, ocean microbiome samples were collected from the Santa Cruz Municipal Wharf, Monterey Bay at multiple time points and then 16S ribosomal RNA (rRNA) sequenced. …”
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453por Man, Jun, Zhang, Xiaomei, Dong, Huan, Li, Simin, Yu, Xiaolin, Meng, Lihong, Gu, Xiaofeng, Yan, Hong, Cui, Jinwei, Lai, Yuxin“…Further analysis of the University of California Santa Cruz and ONCOMINE databases identified 17 hub genes. …”
Publicado 2019
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454“…METHODOLOGY: The HTT gene sequence was retrieved, CRISPR sites were identified, and gRNA sequence was determined using the University of California Santa Cruz (UCSC) Genome Browser. HTT protein molecular structure elucidation was retrieved through PDB and Swiss Model. …”
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455por Frost, F. Graeme, Cherukuri, Praveen F., Milanovich, Samuel, Boerkoel, Cornelius F.“…To test this hypothesis, we analysed the publicly available TCGA‐TARGET‐GTEx gene expression data set from the University of California Santa CruzToil recompute project using WGCNA to delineate co‐correlated ‘modules’ from tumour gene expression profiles and functional enrichment of these modules to hierarchically cluster tumours. …”
Publicado 2019
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456por Lee, Christopher M, Barber, Galt P, Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Gonzalez, Jairo Navarro, Hinrichs, Angie S, Lee, Brian T, Nassar, Luis R, Powell, Conner C, Raney, Brian J, Rosenbloom, Kate R, Schmelter, Daniel, Speir, Matthew L, Zweig, Ann S, Haussler, David, Haeussler, Maximilian, Kuhn, Robert M, Kent, W James“…The University of California Santa Cruz Genome Browser website (https://genome.ucsc.edu) enters its 20th year of providing high-quality genomics data visualization and genome annotations to the research community. …”
Publicado 2020
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457por Chorbadjiev, Lubomir, Kendall, Jude, Alexander, Joan, Zhygulin, Viacheslav, Song, Junyan, Wigler, Michael, Krasnitz, Alexander“…With applications to cancer diagnostics in mind, the SCGV allows for zooming and linkage to the University of California at Santa Cruz Genome Browser from each of the multiple integrated views of single-cell copy-number profiles. …”
Publicado 2020
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458“…In the current study, the differentially expressed genes (DEGs) were filtered based on the integrated gene expression data acquired from The University of California at Santa Cruz (UCSC) Genome Browser. Then, IRGs and transcriptional factors (TFs) were screened based on the ImmPort database and Cistrome database. …”
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459“…We present a protocol to prepare extracted DNA for sequencing on the Illumina sequencing platform that has been optimized for ancient and degraded DNA. Our approach, the Santa Cruz Reaction or SCR, uses directional splinted ligation of Illumina’s P5 and P7 adapters to convert natively single-stranded DNA and heat denatured double-stranded DNA into sequencing libraries in a single enzymatic reaction. …”
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460“…IL-1ß and 8 expressions were assessed by immunohistochemistry using antibodies antihuman IL-1ß human (sc-7884, Santa Cruz® H-153) and antihuman IL-8 (ab7747, abcam®). …”
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