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501por Meyer, Laurence R., Zweig, Ann S., Hinrichs, Angie S., Karolchik, Donna, Kuhn, Robert M., Wong, Matthew, Sloan, Cricket A., Rosenbloom, Kate R., Roe, Greg, Rhead, Brooke, Raney, Brian J., Pohl, Andy, Malladi, Venkat S., Li, Chin H., Lee, Brian T., Learned, Katrina, Kirkup, Vanessa, Hsu, Fan, Heitner, Steve, Harte, Rachel A., Haeussler, Maximilian, Guruvadoo, Luvina, Goldman, Mary, Giardine, Belinda M., Fujita, Pauline A., Dreszer, Timothy R., Diekhans, Mark, Cline, Melissa S., Clawson, Hiram, Barber, Galt P., Haussler, David, Kent, W. James“…The University of California Santa Cruz (UCSC) Genome Browser (http://genome.ucsc.edu) offers online public access to a growing database of genomic sequence and annotations for a wide variety of organisms. …”
Publicado 2013
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502por Mishima, Hiroyuki, Aerts, Jan, Katayama, Toshiaki, Bonnal, Raoul J P, Yoshiura, Koh-ichiro“…BACKGROUND: The University of California, Santa Cruz (UCSC) genome database is among the most used sources of genomic annotation in human and other organisms. …”
Publicado 2012
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503por Michel, Audrey M., Fox, Gearoid, M. Kiran, Anmol, De Bo, Christof, O’Connor, Patrick B. F., Heaphy, Stephen M., Mullan, James P. A., Donohue, Claire A., Higgins, Desmond G., Baranov, Pavel V.“…GWIPS-viz is based on The University of California Santa Cruz (UCSC) Genome Browser. Ribo-seq tracks, coupled with mRNA-seq tracks, are currently available for several genomes: human, mouse, zebrafish, nematode, yeast, bacteria (Escherichia coli K12, Bacillus subtilis), human cytomegalovirus and bacteriophage lambda. …”
Publicado 2014
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504por Farrell, Catherine M., O’Leary, Nuala A., Harte, Rachel A., Loveland, Jane E., Wilming, Laurens G., Wallin, Craig, Diekhans, Mark, Barrell, Daniel, Searle, Stephen M. J., Aken, Bronwen, Hiatt, Susan M., Frankish, Adam, Suner, Marie-Marthe, Rajput, Bhanu, Steward, Charles A., Brown, Garth R., Bennett, Ruth, Murphy, Michael, Wu, Wendy, Kay, Mike P., Hart, Jennifer, Rajan, Jeena, Weber, Janet, Snow, Catherine, Riddick, Lillian D., Hunt, Toby, Webb, David, Thomas, Mark, Tamez, Pamela, Rangwala, Sanjida H., McGarvey, Kelly M., Pujar, Shashikant, Shkeda, Andrei, Mudge, Jonathan M., Gonzalez, Jose M., Gilbert, James G. R., Trevanion, Stephen J., Baertsch, Robert, Harrow, Jennifer L., Hubbard, Tim, Ostell, James M., Haussler, David, Pruitt, Kim D.“…Members of the collaboration, who are from NCBI, the Wellcome Trust Sanger Institute and the University of California Santa Cruz, provide coordinated and continuous review of the dataset to ensure high-quality CCDS representations. …”
Publicado 2014
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505“…This study reports for the first time a large-scale effect of a vector control intervention using a microencapsulated formulation of organophosphates and insect growth regulator on house infestation by T. infestans, in the southwestern region of Santa Cruz de la Sierra Department, within the Bolivian chaco. …”
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506“…In our previous studies, we have repeatedly detected a ‘non-specific’ endogenous protein of about 60 kD in Western blots of protein lysates from HEK293T or HeLa cells using the anti-His-tag antibody (His-probe (H3), catalogue #, SC-8036, Santa Cruz Biotech. Co.) (Yu et al., J. Biol. Chem. 284 (2009) 1505–1513). …”
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507por Pawlikowski, Marek, Jaranowska, Maria, Pisarek, Hanna, Kubiak, Robert, Fuss-Chmielewska, Julita, Winczyk, Katarzyna“…Follicle-stimulating hormone receptors immunostaining was performed on paraffin sections using the rabbit anti-human FSHR polyclonal antibody raised against a 1-190 amino acid sequence from the human FSHR (sc-13935, Santa Cruz). RESULTS: Normal thyroid follicles do not show immunopositivity for FSHR. …”
Publicado 2015
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508“…The siRNA Transfection Reagent kit (Santa Cruz Biotechnology, Inc.) was used for the administration of COX-2 silencer RNA (siRNA) into the colon cancer cells. …”
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509“…In addition, a regulatory network was constructed using the known regulatory data between transcription factors (TFs) and target genes in the University of California Santa Cruz (UCSC) Genome Browser (http://genome.ucsc.edu) and the regulatory impact factor of each TF was calculated. …”
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510por Mok, Jungbin, Krotkov, Nickolay A., Arola, Antti, Torres, Omar, Jethva, Hiren, Andrade, Marcos, Labow, Gordon, Eck, Thomas F., Li, Zhanqing, Dickerson, Russell R., Stenchikov, Georgiy L., Osipov, Sergey, Ren, Xinrong“…In the September-October 2007 biomass-burning season in Santa Cruz, Bolivia, we studied light absorbing (chromophoric) organic or “brown” carbon (BrC) with surface and space-based remote sensing. …”
Publicado 2016
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511“…Moreover, screening of transcription factors using University of California Santa Cruz (UCSC) Genome Browser, protein-protein interaction (PPI) network analysis, Gene Ontology (GO) and pathway enrichment analysis revealed that MYC participates in the transcriptional regulation of RPL34, which interacts with the subunits of eukaryotic translation initiation factor 3 (eIF3) and probably involves the translational control of growth-promoting proteins. …”
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512por Borges, Tássia Silvana, Schwanke, Natalí Lippert, Reuter, Cézane Priscila, Neto, Léo Kraether, Burgos, Miria Suzana“…OBJECTIVE: To describe the factors associated with dental caries among students from Santa Cruz do Sul, Rio Grande do Sul, Brazil. METHODS: A cross-sectional study was conducted in a random sample of 623 students of both genders, aged 10-17 years old. …”
Publicado 2016
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513por Tyner, Cath, Barber, Galt P., Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Eisenhart, Christopher, Fischer, Clayton M., Gibson, David, Gonzalez, Jairo Navarro, Guruvadoo, Luvina, Haeussler, Maximilian, Heitner, Steve, Hinrichs, Angie S., Karolchik, Donna, Lee, Brian T., Lee, Christopher M., Nejad, Parisa, Raney, Brian J., Rosenbloom, Kate R., Speir, Matthew L., Villarreal, Chris, Vivian, John, Zweig, Ann S., Haussler, David, Kuhn, Robert M., Kent, W. James“…Since its 2001 debut, the University of California, Santa Cruz (UCSC) Genome Browser (http://genome.ucsc.edu/) team has provided continuous support to the international genomics and biomedical communities through a web-based, open source platform designed for the fast, scalable display of sequence alignments and annotations landscaped against a vast collection of quality reference genome assemblies. …”
Publicado 2017
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514por da Silva, Anna Larissa Cortês, Ribeiro, Karla Danielly da Silva, de Melo, Larisse Rayanne Miranda, Bezerra, Dalila Fernandes, de Queiroz, Jaluza Luana Carvalho, Lima, Mayara Santa Rosa, Pires, Jeane Franco, Bezerra, Danielle Soares, Osório, Mônica Maria, Dimenstein, Roberto“…METHODS: A longitudinal observational study was carried out with 100 mothers at University Hospital Ana Bezerra (HUAB), at Universidade Federal do Rio Grande do Norte, in Santa Cruz (RN), Northeast Brazil. Samples of colostrum (n=100), transitional milk (n=77), and mature milk (n=63) were collected. …”
Publicado 2017
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515“…We used log-linear analyses to examine how habitat, time of day, and proximity to housing influenced the activity patterns of both male and female pumas in the Santa Cruz Mountains. We used spatial GPS location data in combination with Overall Dynamic Body Acceleration measurements recorded by onboard accelerometers to quantify how development density affected the average distances traveled and energy expended by pumas. …”
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516por Pugach, Irina, Duggan, Ana T, Merriwether, D Andrew, Friedlaender, Françoise R, Friedlaender, Jonathan S, Stoneking, Mark“…We also report substantial post-Austronesian gene flow across the Solomons. In particular, Santa Cruz (in Remote Oceania) exhibits extraordinarily high levels of Papuan ancestry that cannot be explained by a simple bottleneck/founder event scenario. …”
Publicado 2018
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517por Zeballos, Rafael, Bologna-Molina, Ronell, Pereira-Prado, Vanesa, Villarroel-Dorrego, Mariana“…Gender, age, tumor location, histological type and subtype of the tumor were recorded and PTHrP expression was determined by indirect immunohistochemistry using monoclonal anti-human PTHrP (1D1 / Santa Cruz Biotechnology). Protein expression and intensity were evaluated under light microscope and finally data recorded and statistically analyzed. …”
Publicado 2018
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518“…We find evidence for latitudinal thermal adaptation: the southernmost San Diego population outperforms the northernmost Santa Cruz in measures of survivorship, knockdown temperature, and ATP synthesis rates during acute thermal exposures. …”
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519por Letsinger, Ayland C., Granados, Jorge Z., Little, Sarah E., Lightfoot, J. Timothy“…To determine conservation among hominids, all SNPs were searched in the University of California, Santa Cruz Genome Browser, which contains Neanderthal and chimpanzee reference genomes. …”
Publicado 2019
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520por Causton, Charlotte E., Moon, Roger D., Cimadom, Arno, Boulton, Rebecca A., Cedeño, Daniel, Lincango, María Piedad, Tebbich, Sabine, Ulloa, Angel“…To study the influence of vegetation zone and related climatic factors on fly numbers, a bi-weekly monitoring program using papaya-baited traps was carried out at a dry, lowland site and at a humid, highland site on Santa Cruz Island between 2012–2014. Female flies, a large proportion of which were inseminated and gravid, were collected throughout the year at both sites, indicating females were active during and between the bird breeding seasons. …”
Publicado 2019
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