“…CVS, the Concurrent Version System, is an open source tool for managing and distributing source code. It allows multiple users dispersed over a wide geographic area to work on the same file at the same time, using a shared directory. …”
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“…We present a new open-source code that calculates one-loop power spectra and cross spectra for matter fields and biased tracers in real and redshift space. …”
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“…Having a fully free and open-source code is an innovative aspect for this kind of software, enabling full customization by the user. …”
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“…First, a new language is introduced for the specification of properties at the source code level of programs. These properties tend to be with respect to program performance. …”
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“…The QCD corrections are included for arbitrary Higgs and quark masses and increase the cross section at the LHC by up to a factor of 2. The source code HIGLU provides the evaluation of the production of the Standard Model [SM] Higgs boson as well as the neutral Higgs bosons of the minimal supersymmetric extension [MSSM]. …”
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“…In this study, we first investigated the source code of CLUMondo, providing a complete, detailed mechanism of this model. …”
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“…Additionally, the source code for PaPhy-ML, utilized for phylogenetic analysis, can be found at https://github.com/RuiSiHu/PaPhy-ML. …”
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“…The Geniac toolbox aims at the harmonization of development practices across developers and automation of the generation of configuration files and containers by parsing the source code of the Nextflow pipeline.…”
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“…Annotating lncRNA for newly sequenced species is challenging due to inconsistencies in functional annotations, specialized computational techniques, limited accessibility to source code, and the shortcomings of reference-based methods for cross-species predictions. …”
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“…AVAILABILITY AND IMPLEMENTATION: Our project is hosted at https://github.com/sys-bio/AMAS, where we provide examples, documentation, and source code files. Our source code is licensed under the MIT open-source license.…”
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“…This approach points to an extension of open computer programs, not only providing access to the source code, but also delivering an easily modifiable and extensible scientific research tool. …”
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“…The CellML Compiler source code is available for download at http://sourceforge.net/projects/cellmlcompiler.…”
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“…The QuantWorm software is written in Java and its source code is freely available, so it does not require use of commercial software or libraries. …”
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“…CONCLUSIONS: The methods presented here provide a quick and efficient method for identifying sets of unrelated individuals in large populations and unlinked markers in marker panels. The C++ source code and instructions along with utilities for generating the input files in the appropriate format are available at http://taurus.ansci.iastate.edu/wiki/people/jabr/Joseph_Abraham.html…”
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“…RESULTS: The result demonstrate that whenever the source code is build standard and non-standard, based on the design patterns, then the result of the proposed method is near to DPJF and better that Pinot and PTIDEJ. …”
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“…We validated this using 100 non-homologous high resolution structures from the PISCES database. The source code and manual is available at http://github.com/sanchak/pagal and on http://dx.doi.org/10.5281/zenodo.11136.…”
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“…The MagiCMicroRna web interface and source code can be downloaded from https://bitbucket.org/mutgx/magicmicrorna.git. …”
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“…The MATLAB and GNU Octave implementation of t-CWT is also made publicly available for the first time as free and open source code. The method is demonstrated on some example ERP data obtained in a passive oddball paradigm. …”
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“…It follows that RNAentropy is state-of-the-art software to compute RNA secondary structure conformational entropy. Source code is available at https://github.com/clotelab/RNAentropy/; a full web server is available at http://bioinformatics.bc.edu/clotelab/RNAentropy, including source code and ancillary programs.…”
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“…The documentation, source code of the software, and a GUI can be found at https://github.com/PNNL-Comp-Mass-Spec/PIXiE and the source code of the backend workflow library used by PIXiE can be found at https://github.com/PNNL-Comp-Mass-Spec/IMS-Informed-Library. …”
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