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  1. 2121
    “…Conterminator can help ensure the quality of reference databases. Source code (GPLv3): https://github.com/martin-steinegger/conterminator…”
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    Terminating contamination: large-scale search identifies more than 2,000,000 contaminated entries in GenBank
  2. 2122
    por Shang, Jiayu, Sun, Yanni
    Publicado 2020
    “…The results show that CHEER can achieve higher accuracy than popular alignment-based and alignment-free taxonomic assignment tools. The source code, scripts, and pre-trained parameters for CHEER are available via GitHub:https://github.com/KennthShang/CHEER.…”
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    CHEER: HierarCHical taxonomic classification for viral mEtagEnomic data via deep leaRning
  3. 2123
    “…AVAILABILITY AND IMPLEMENTATION: The Breeze application with video tutorial and technical documentation is accessible at https://breeze.fimm.fi; the R source code is publicly available at https://github.com/potdarswapnil/Breeze under GNU General Public License v3.0. …”
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    Breeze: an integrated quality control and data analysis application for high-throughput drug screening
  4. 2124
    “…AVAILABILITY AND IMPLEMENTATION: Source code implemented in the MATALAB Cobratoolbox is freely available at https://github.com/chang88ye/NIHBA. …”
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    NIHBA: a network interdiction approach for metabolic engineering design
  5. 2125
    “…The precise value and the root cause of the error cannot be assessed due to the rounding effect of the results reported by the Elekta XVI software and lack of access to the source code.…”
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    Assessment of error in the MV radiation isocenter position calculated with the Elekta XVI software
  6. 2126
    “…Thus, camera image rescaling also enables a CNN to discover the size of an object. The source code for experiments with the COCO data set is publicly available in Github (https://github.com/VisionAI-USF/COCO_Size_Decoding/).…”
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    Lung Nodule Sizes Are Encoded When Scaling CT Image for CNN's
  7. 2127
    “…These results therefore reinforce our belief that this open source code will facilitate the training of accurate N-hidden layer ANN sophisticated machines with high performance and quality delivery of geophysical solutions. …”
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    N-hidden layer artificial neural network architecture computer code: geophysical application example
  8. 2128
    “…The neural network framework allows exploiting the full features in distance space, and therefore improves accuracy of the disulfide bond engineering site prediction. The source code and a web server are available at http://liulab.csrc.ac.cn/ssbondpre.…”
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    Prediction of disulfide bond engineering sites using a machine learning method
  9. 2129
    “…To the best of our knowledge, this new capability represents the first computational method for accurately staging a cancer sample. The R source code used in this study is available at GitHub (https://github.com/yxchspring/CECS).…”
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    Co-expression based cancer staging and application
  10. 2130
    por Jones, Pete R.
    Publicado 2020
    “…Full technical details and information on how to freely acquire the source code are included.…”
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    An Open-source Static Threshold Perimetry Test Using Remote Eye-tracking (Eyecatcher): Description, Validation, and Preliminary Normative Data
  11. 2131
    “…Therefore, this original type of score offers a possibility to improve the success of statistical PMFs in the various fields of structural biology where they are applied. The open-source code is available for download at https://gitlab.rpbs.univ-paris-diderot.fr/src/ig-score.…”
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    An information gain-based approach for evaluating protein structure models
  12. 2132
    “…Moreover, MAVIO-GNSS further improved the vehicle positioning accuracy under a long-distance driving state. The source code is publicly available for the benefit of the robotics community.…”
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    Consistent Monocular Ackermann Visual–Inertial Odometry for Intelligent and Connected Vehicle Localization
  13. 2133
    “…LocusFocus is available under the MIT license, with full documentation and source code accessible on GitHub at https://github.com/naim-panjwani/LocusFocus.…”
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    LocusFocus: Web-based colocalization for the annotation and functional follow-up of GWAS
  14. 2134
    “…Moreover, AGs guide the model activations to be focused around salient regions, which provides better insights into how model predictions are made. The source code for the proposed AG models is publicly available.…”
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    Attention Gated Networks: Learning to Leverage Salient Regions in Medical Images
  15. 2135
    “…A user-friendly web interface, the documentation containing instructions for local installation and usage, and the source code of RNAsamba can be found at https://rnasamba.lge.ibi.unicamp.br/.…”
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    RNAsamba: neural network-based assessment of the protein-coding potential of RNA sequences
  16. 2136
    “…Experimental results on simulated and real sequencing datasets show that MAM achieves better performance in speed than other state-of-the-art alignment tools. The source code is available at https://github.com/weiquan/mam.…”
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    Short Read Alignment Based on Maximal Approximate Match Seeds
  17. 2137
    “…AVAILABILITY AND IMPLEMENTATION: The source code of the algorithms and all the datasets are available at https://github.com/YichaoOU/Set_cover_tools. …”
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    Set cover-based methods for motif selection
  18. 2138
    “…AVAILABILITY AND IMPLEMENTATION: Windows and Linux executables and source code are available under the EPL 2.0 Licence at https://github.com/TheAngryFox/ModelExplorer and https://www.ntnu.edu/almaaslab/downloads. …”
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    ErrorTracer: an algorithm for identifying the origins of inconsistencies in genome-scale metabolic models
  19. 2139
    “…AVAILABILITY AND IMPLEMENTATION: SigHotSpotter is at https://SigHotSpotter.lcsb.uni.lu as a web tool. Source code, example datasets and other information are available at https://gitlab.com/srikanth.ravichandran/sighotspotter. …”
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    SigHotSpotter: scRNA-seq-based computational tool to control cell subpopulation phenotypes for cellular rejuvenation strategies
  20. 2140
    “…PolyFold is capable of simulating the complex process of protein folding even on modest personal computers, thus making it accessible to the general public for fostering citizen science. Open source code of PolyFold is freely available for download at https://github.com/Bhattacharya-Lab/PolyFold. …”
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    PolyFold: An interactive visual simulator for distance-based protein folding
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