“…This application is available online at https://provision.shinyapps.io/provision/ for free use. The source code is available at https://github.com/JamesGallant/ProVision under the GPL version 3.0 license.…”
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“…AVAILABILITY AND IMPLEMENTATION: The source code for this method is available under the opensource Apache 2.0 license in the latest release of the LeafCutter software package available online at http://davidaknowles.github.io/leafcutter. …”
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“…The collected dataset and source code can be found in https://github.com/Elham-khalili/Soybean-Charcoal-Rot-Disease-Prediction-Dataset-code.…”
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“…Furthermore, the pipeline enables the user to identify potential biomarkers in case-control metagenomic samples by investigating functional differences. The source code for this software is available from https://github.com/mhnb/camamed. …”
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“…AVAILABILITY AND IMPLEMENTATION: Source code, dataset, documentation, Jupyter notebooks and Docker container are available at https://github.com/boalang/nr. …”
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“…Finally, we develop and document open-source code and data for each compression method tested here, which can be accessed through the Digital Biomarker Discovery Pipeline as the “Biosignal Data Compression Toolbox,” an open-source, accessible software platform for compressing biosignal data.…”
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“…AVAILABILITY AND IMPLEMENTATION: Source code is available at https://github.com/cheminfo/COMPASS. …”
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“…AVAILABILITY AND IMPLEMENTATION: Source code is available at https://github.com/DormanLab/AmpliCI. …”
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“…The online server of BPFinder is available at http://114.215.129.245:8080/atomic/. The program, source code and data can be downloaded from https://github.com/hyr0771/BPFinder.…”
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“…A benchmark shows that FastTrack is orders of magnitude faster than state-of-the-art tracking algorithms, with a comparable tracking accuracy. The source code is available under the GNU GPLv3 at https://github.com/FastTrackOrg/FastTrack and pre-compiled binaries for Windows, Mac and Linux are available at http://www.fasttrack.sh.…”
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“…The program follows modern guidelines for software in general and JavaScript in specific, such as version control, source code analysis, integration testing and semantic versioning. …”
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“…CONCLUSIONS: Our method is simple yet effective, which is potentially used for personal automatic heartbeat classification in remote medical monitoring. The source code is provided on https://github.com/JackAndCole/Deep-Neural-Network-For-Heartbeat-Classification.…”
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“…It is modeled after the ISA core specifications and designed in keeping with isatools conventions, making it consistent and intuitive to use for the community. isa4j is implemented in Java (JDK11+) and freely available under the terms of the MIT license from the Central Maven Repository ( https://mvnrepository.com/artifact/de.ipk-gatersleben/isa4j). The source code, detailed documentation, usage examples and performance evaluations can be found at https://github.com/IPK-BIT/isa4j.…”
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“…The range of applicability and robustness make the proposed method a viable alternative for classification using sparse microbiome count data. The source code is available at https://github.com/kshestop/DCMD for academic use.…”
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“…MATERIALS AND METHODS: Here, we present a different approach, a Bayesian negative binomial multilevel model with mixed effects, for the projection of the COVID-19 pandemic and we apply this model to the Turkish case. The model source code is available at https://github.com/kansil/covid-19. …”
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“…AVAILABILITY AND IMPLEMENTATION: The Docker image of ProteomeExpert is freely available from https://hub.docker.com/r/lifeinfo/proteomeexpert. The source code of ProteomeExpert is also openly accessible at http://www.github.com/guomics-lab/ProteomeExpert/. …”
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“…Our results also show significant performance improvement for lattice angle predictions. Source code and trained models can be freely accessed at https://github.com/usccolumbia/MLatticeABC.…”
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“…To illustrate the rich functionality of pyrpipe, we provide case studies using RNA-Seq data from GTEx, SARS-CoV-2-infected human cells, and Zea mays. All source code is freely available at https://github.com/urmi-21/pyrpipe; the package can be installed from the source, from PyPI (https://pypi.org/project/pyrpipe), or from bioconda (https://anaconda.org/bioconda/pyrpipe). …”
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“…Given a list of SNPs, snpXplorer can also be used to perform variant-to-gene mapping and gene-set enrichment analysis to identify molecular pathways that are overrepresented in the list of input SNPs. snpXplorer is freely available at https://snpxplorer.net. Source code, documentation, example files and tutorial videos are available within the Help section of snpXplorer and at https://github.com/TesiNicco/snpXplorer.…”
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“…AVAILABILITY IMPLEMENTATION: The source code for the WeakRM algorithm, along with the datasets used, are freely accessible at: https://github.com/daiyun02211/WeakRM SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
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