“…Availability: PAGAN is written in C++, licensed under the GPL and its source code is available at http://code.google.com/p/pagan-msa. …”
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“…The ProteinHistorian web server, source code, and pre-computed ages for 32 eukaryotic genomes are freely available under the GNU public license at http://lighthouse.ucsf.edu/ProteinHistorian/.…”
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“…The framework is open-source (code.google.com/p/milo-lab), implemented in pure Python and tested mainly on Linux. …”
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“…AVAILABILITY: A linux executable and a Perl script with examples are given in the supplementary material (Additional file 1). The source code is available upon request from the authors.…”
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“…NEXCADE not only enables network visualization at every step of the targeted attacks, but also allows risk assessment, i.e. identification of nodes critical for the robustness of the system of interest, in order to devise and implement context-based strategies for restructuring a network, or to achieve resilience against link or node failures. Source code and license for the software, designed to work on a Linux-based operating system (OS) can be downloaded at http://www.nipgr.res.in/nexcade_download.html. …”
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“…AVAILABILITY: The Genometa program, a step by step tutorial and Java source code are freely available from http://genomics1.mh-hannover.de/genometa/ and on http://code.google.com/p/genometa/. …”
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“…CONCLUSION: Our GPU-based Fast and Scalable k-Nearest Neighbour search technique (GPU-FS-kNN) provides a significant performance improvement for nearest neighbour computation in large-scale networks. Source code and the software tool is available under GNU Public License (GPL) at https://sourceforge.net/p/gpufsknn/.…”
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“…CONCLUSIONS: ProteinTracker is an open-source web-based application that provides organizations with the ability to track key data involved in the production and purification of proteins and may be modified to meet the specific needs of an organization. The source code and database setup script can be downloaded from http://sourceforge.net/projects/proteintracker. …”
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“…These results suggest that this approach holds distinct promise as a mechanism for judging annotation quality. Availability: Source code is available at the authors website: http://homepages.cs.ncl.ac.uk/m.j.bell1/annotation. …”
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“…CONCLUSIONS: Implemented in C, ParsEval provides the quickest and most feature-rich solution for genome annotation comparison to date. The source code is freely available (under an ISC license) at http://parseval.sourceforge.net/.…”
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“…CONCLUSIONS: The significantly higher classification accuracy obtained by BoNB, together with the significance of the biomarkers identified from the Type 1 Diabetes dataset, prove the effectiveness of BoNB as an algorithm for both classification and biomarker selection from genome-wide SNP data. AVAILABILITY: Source code of the BoNB algorithm is released under the GNU General Public Licence and is available at http://www.dei.unipd.it/~sambofra/bonb.html.…”
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“…Availability and implementation: The source code implemented by MATLAB is freely available at: http://zhoulab.usc.edu/sMBPLS/. …”
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“…The SFam database catalogs protein-family quality metrics, multiple sequence alignments, hidden Markov models, and phylogenetic trees. Our source code and database are publicly available and will be subject to frequent updates (http://edhar.genomecenter.ucdavis.edu/sifting_families/).…”
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“…Availability and implementation: The source code, evaluations, documentation and other supplementary materials are available at http://www.chibi.ubc.ca/WhiteText. …”
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“…The API is available through the RubyGem system. Source code and documentation are available at https://github.com/misshie/bioruby-ucsc-api/ under the Ruby license. …”
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“…Implementations are available as source code at: http://biogrid.engr.uconn.edu/tfbs_search/.…”
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“…Furthermore, to facilitate the use of our algorithm in other applications, the source code that implements our algorithm was released as FeaLect, a documented R package in CRAN.…”
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“…Program executables, source code, and documentation is available at http://www.bme.ucdavis.edu/facciotti/resources_data/software/.…”
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“…Availability and implementation: RNA-eXpress software, source code, user manuals, supporting tutorials, developer guides and example data are available at http://www.rnaexpress.org. …”
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