“…PSICAT is available as an open-source code repository at the following url, allowing researchers to reuse and adapt it to their requirements. https://github.com/zenBen/Kanizsa_Prime/.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…AVAILABILITY AND IMPLEMENTATION: The UEA sRNA Workbench is available at: http://srna-workbench.cmp.uea.ac.uk. The source code is available at: https://github.com/sRNAworkbenchuea/UEA_sRNA_Workbench SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…Furthermore the package contains seamless interfaces to biological databases and external software. The source code is freely accessible at https://github.com/biotite-dev/biotite. …”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…Moreover, our case studies demonstrate that our method is effective and reliable in predicting the interactions between lncRNAs and proteins. AVAILABILITY: The source code and supporting files are publicly available at: http://denglab.org/PLIPCOM/.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…AVAILABILITY AND IMPLEMENTATION: The source code used in the simulations along with test images is available at https://github.com/blazi13/qbioimages. …”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…Such analyses and corresponding visualizations help users quickly gain insights about their datasets. The source code of pyMCPSC is available under the GPLv3.0 license through a GitHub repository (https://github.com/xulesc/pymcpsc).…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…Also, to our knowledge, it is the first published bioinformatics application utilizing capsule network, which will provide a useful example for the community. Executable and source code can be download at http://dslsrv8.cs.missouri.edu/~cf797/MUFoldGammaTurn/download.html.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…Our results demonstrated that the framework of PredT4SE-Stack was a feasible and effective way to accurately identify T4SEs based on protein sequence information. The datasets and source code of PredT4SE-Stack are freely available at http://xbioinfo.sjtu.edu.cn/PredT4SE_Stack/index.php.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…CONCLUSION: MiteFinderII is an accurate and effective tool to detect MITEs hidden in eukaryotic genomes. The source code is freely accessible at the website: https://github.com/screamer/miteFinder.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…We also show its utility in the analysis of an in-house dataset including two read sets characterized by low and high sequencing quality. ddSeeker and its source code are available at https://github.com/cgplab/ddSeeker. …”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…We highlight that the systems we present in this study are not applicable only to the BioCreative VI Task 5, but can be effortlessly re-trained to extract any types of relations of interest, with no modifications of the source code required, if a manually annotated corpus is provided as training data in a specific file format.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…We provide this open source code on GitHub so that it is free and accessible to all investigators.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…AVAILABILITY AND IMPLEMENTATION: The toolkit AuTom-dualx (alignment module dualxmauto and reconstruction module [Formula: see text]) are accessible for general application at http://ear.ict.ac.cn, and the key source code is freely available under request. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…AVAILABILITY AND IMPLEMENTATION: Source code is freely available at https://github.com/alexjau/uqsa. …”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…AVAILABILITY AND IMPLEMENTATION: The source code is freely available at https://github.com/mpgerstl/FTA. …”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…RESULTS: Especially, we could identify that (a) graph centrality measures of the frontal eye fields (FEF), the inferior temporal gyrus (ITG), and the temporopolar area (TP) were significantly affected by aging, (b) CDD intensities between FEF and the primary motor cortex (M1) and between ITG and TP were highly significantly affected by aging, and (c) CDDs between M1 and the anterior prefrontal cortex (aPFC) were highly significantly affected by gender. SOFTWARE: The R source code for fMRI data preprocessing, estimation of directional dependences, network visualization, and statistical analyses are available at https://github.com/namgillee/ CDDforFMRI.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…The software is available as a command-line tool as well as a library, and supports a variety of file formats such as PDB, dcd, and xtc files. Source code, documentation, and examples are freely available at https://github.com/srnas/barnaba under GNU GPLv3 license.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…A dockerized instance of galaxy containing SMAGEXP and its dependencies is available on Docker hub. Source code, help, and installation instructions are available on GitHub. …”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…CONCLUSION: By providing open source code alongside the freely accessible MIMIC-III database, we enable end-to-end reproducible analysis of electronic health records.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…We illustrate pSBVB with SNP data from tetraploid potato and partial sequence data from octoploid strawberry, and we show that GS is a promising breeding strategy for polyploid species but that the actual advantage critically depends on the underlying genetic architecture. Source code, examples and a complete manual are freely available in GitHub https://github.com/lauzingaretti/pSBVB.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso