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  1. 2861
    “…The platform is available at http://www.microbiome-bigdata.com/CRISPRimmunity. Moreover, the source code for batch analysis are published on Github (https://github.com/HIT-ImmunologyLab/CRISPRimmunity).…”
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    Online Artículo Texto
    CRISPRimmunity: an interactive web server for CRISPR-associated Important Molecular events and Modulators Used in geNome edIting Tool identifYing
  2. 2862
    “…Our tool represents a significant advancement in the analysis of spheroid images and will facilitate the widespread adoption of 3D spheroid models in scientific research. The source code and a detailed tutorial for SpheroScan are available at https://github.com/FunctionalUrology/SpheroScan.…”
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    SpheroScan: A User-Friendly Deep Learning Tool for Spheroid Image Analysis
  3. 2863
    “…The proposed lightweight model and methods could be deployed on mobile devices to automatically and objectively assess FHB severity with images from low-cost RGB cameras. The source code and the dataset are available at https://github.com/cvims/FHB_classification.…”
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    Efficient Noninvasive FHB Estimation using RGB Images from a Novel Multiyear, Multirater Dataset
  4. 2864
    por Yang, Weiqin, Li, Dexin, Huang, Ranran
    Publicado 2023
    “…Our work suggests that EVMP can highlight the mutation information of synthetic promoters and significantly improve the prediction accuracy of strength. The source code is publicly available on GitHub: https://github.com/Tiny-Snow/EVMP.…”
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    Online Artículo Texto
    EVMP: enhancing machine learning models for synthetic promoter strength prediction by Extended Vision Mutant Priority framework
  5. 2865
    “…AVAILABILITY AND IMPLEMENTATION: The source code and data are available at https://github.com/fatemeh-rafiei/DeepTraSynergy.…”
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    Online Artículo Texto
    DeepTraSynergy: drug combinations using multimodal deep learning with transformers
  6. 2866
    “…By focussing on publishing open-source code and documentation, and by using an affordable (<£50) and mass-produced model of fingerprint sensor, we are able to make this platform freely available to the large global user community that utilises ODK and related data collection systems.…”
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    Online Artículo Texto
    Biometric linkage of longitudinally collected electronic case report forms and confirmation of subject identity: an open framework for ODK and related tools
  7. 2867
    “…AVAILABILITY AND IMPLEMENTATION: The source code and data used in this paper can be found in https://github.com/CSUBioGroup/scNCL-release.…”
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    scNCL: transferring labels from scRNA-seq to scATAC-seq data with neighborhood contrastive regularization
  8. 2868
    “…Tutorials, usage notes, and download links to the source code can be found at https://github.com/engbiopct/EasySSR.…”
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    Online Artículo Texto
    EasySSR: a user-friendly web application with full command-line features for large-scale batch microsatellite mining and samples comparison
  9. 2869
    “…The proposed algorithmic solutions are comparable in their characteristics to the well-known Rosetta and FoldX packages for the modeling of three-dimensional structures and have great potential for further development and optimization. The source code of algorithmic solutions has been deposited to and is available at the GitHub source.…”
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    Modeling Side Chains in the Three-Dimensional Structure of Proteins for Post-Translational Modifications
  10. 2870
    “…The collected images and the source code of the experiments are available in two public, open-access repositories, making the presented research fully reproducible.…”
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    Online Artículo Texto
    Quality Control of Carbon Look Components via Surface Defect Classification with Deep Neural Networks
  11. 2871
    “…Future work will explore the integration of downstream applications to enhance EFA-Net’s utility for clinicians and patients in real-world diagnostic scenarios. The source code of EFA-Net is available at: https://github.com/tianjiamutangchun/EFA-Net.…”
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    Automatic and efficient pneumothorax segmentation from CT images using EFA-Net with feature alignment function
  12. 2872
    “…In a nutshell, T9GPred is a novel computational tool for systems-level prediction of T9SS and streamlining future experimentation. The source code of the computational tool is available in our GitHub repository: https://github.com/asamallab/T9GPred. …”
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    T9GPred: A Comprehensive Computational Tool for the Prediction of Type 9 Secretion System, Gliding Motility, and the Associated Secreted Proteins
  13. 2873
    “…Furthermore, we assessed the effectiveness and generalization capability of our GraphIdn model by applying it to identify and locate peroxisomal proteins, which yielded promising outcomes. The source code and datasets can be accessed at https://github.com/SJNNNN/GraphIdn.…”
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    Identification of plant vacuole proteins by using graph neural network and contact maps
  14. 2874
    “…The probabilistic generation steps have the potential in tinkering with molecule design due to their capability of recommending how to modify existing molecules with explanation, guided by the learned implicit molecule chemistry. The source code and datasets can be accessed freely at https://github.com/usccolumbia/GMTransformer…”
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    Online Artículo Texto
    Probabilistic generative transformer language models for generative design of molecules
  15. 2875
    “…Applying this model to the recently proposed CCTSDB 2021 dataset, for small objects, the precision is 88.1%, and the recall rate is 79.8%, compared with the original YOLOv5s model, it is improved by 12.5% and 23.9% respectively, and small traffic signs can be effectively detected under different weather conditions, with low miss rate and high detection accuracy. The source code will be made publicly available at https://github.com/yang-0706/ImprovedYOLOv5s.…”
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    Improved YOLOv5-based for small traffic sign detection under complex weather
  16. 2876
    “…AVAILABILITY AND IMPLEMENTATION: The source code for FrameD along with the data generated during the demonstration of FrameD is available in a public Github repository at https://github.com/dna-storage/framed, (https://dx.doi.org/10.5281/zenodo.7757762).…”
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    FrameD: framework for DNA-based data storage design, verification, and validation
  17. 2877
    “…AVAILABILITY AND IMPLEMENTATION: Source code is available at Github (https://github.com/1alnoman/ScribbleDom) and Zenodo (https://zenodo.org/badge/latestdoi/681572669).…”
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    ScribbleDom: using scribble-annotated histology images to identify domains in spatial transcriptomics data
  18. 2878
    “…Here, the algorithm is described and the corresponding Python source code is provided. Furthermore, an analysis of its run time is performed and all models from the BioModels database as well as further examples are examined. …”
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    Online Artículo Texto
    Computing all persistent subspaces of a reaction-diffusion system
  19. 2879
    “…Therefore, jointly using multi-omic endophenotypes and their CEP associations is promising to reveal genetic risk factors. The source code and manual of inMTSCCA are available at https://ngdc.cncb.ac.cn/biocode/tools/BT007330.…”
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    inMTSCCA: An Integrated Multi-task Sparse Canonical Correlation Analysis for Multi-omic Brain Imaging Genetics
  20. 2880
    “…For reproducibility, we provide the data and source code of GNNLink on our GitHub repository: https://github.com/sdesignates/GNNLink.…”
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    Online Artículo Texto
    Predicting gene regulatory links from single-cell RNA-seq data using graph neural networks
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