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  1. 2881
    “…Standardization showed almost no change when using source code variations. The strength of the effect in the inpatient restriction is highly dependent on the outcome. …”
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    Evaluating the impact of alternative phenotype definitions on incidence rates across a global data network
  2. 2882
    por Cai, Bo, Luo, Jian, Feng, Zhen
    Publicado 2023
    “…Automating the conversion of GUI design images into source code can significantly reduce the coding workload for front-end developers. …”
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    A novel code generator for graphical user interfaces
  3. 2883
    “…Only 8% of articles published the source code, and 10% made the dataset openly available. …”
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    Methodological evaluation of original articles on radiomics and machine learning for outcome prediction based on positron emission tomography (PET)
  4. 2884
    por Gardner, Shea N, Wagner, Mark C
    Publicado 2005
    “…As more sequence data becomes available for multiple strains and isolates of a species, automated, computational approaches such as those described here will be essential to make sense of large amounts of information, and to guide and optimize efforts in the laboratory. The software and source code for SPR Opt is publicly available and free for non-profit use at .…”
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    Software for optimization of SNP and PCR-RFLP genotyping to discriminate many genomes with the fewest assays
  5. 2885
    por Bininda-Emonds, Olaf RP
    Publicado 2005
    “…However, the good performance offered by the program also translates to the alignment of any set of protein-coding sequences. transAlign, including the source code, is freely available at http://www.tierzucht.tum.de/Bininda-Emonds/ (under "Programs").…”
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    transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences
  6. 2886
    “…The promising estimation ability demonstrated in the results section suggests that the proposed approach provides a proper solution to the missing value estimation problem. The source code of the SVR method is available from for non-commercial use.…”
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    Missing value estimation for DNA microarray gene expression data by Support Vector Regression imputation and orthogonal coding scheme
  7. 2887
    “…Documentation, example files, source code and binary files can be freely downloaded from the project website at . …”
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    Gemvid, an open source, modular, automated activity recording system for rats using digital video
  8. 2888
    por He, Ji, Dai, Xinbin, Zhao, Xuechun
    Publicado 2007
    “…PLAN is freely available to academic users at . The source code for local deployment is provided under free license. …”
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    PLAN: a web platform for automating high-throughput BLAST searches and for managing and mining results
  9. 2889
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    Genome display tool: visualizing features in complex data sets
  10. 2890
    “…This result not only speeds the current standard analyses, but also makes possible ones where many iterations of the filter may be required, such as might be required in a bootstrap or parameter estimation setting. Source code and executables are available at .…”
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    An efficient pseudomedian filter for tiling microrrays
  11. 2891
    “…Biologists wishing to provide their own subfamily definitions can do so. Source code is available on the Web page. The Berkeley Phylogenomics Group PhyloFacts resource contains pre-calculated subfamily predictions and subfamily HMMs for more than 40,000 protein families and domains at http://phylogenomics.berkeley.edu/phylofacts/.…”
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    Automated Protein Subfamily Identification and Classification
  12. 2892
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    The GlycanBuilder: a fast, intuitive and flexible software tool for building and displaying glycan structures
  13. 2893
    “…The new computational procedure can be used in more or less the same way as one would use simple hierarchical clustering without performing any special transformation of data prior to the analysis. The R and C-source code for implementing our algorithm is incorporated within the R package gimmR which is freely available at http://eh3.uc.edu/gimm. …”
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    Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
  14. 2894
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    OCPAT: an online codon-preserved alignment tool for evolutionary genomic analysis of protein coding sequences
  15. 2895
    por Shen, Yao Qing, Burger, Gertraud
    Publicado 2007
    “…For a trial of our approach, we provide a webservice for mitochondrial protein prediction (named YimLOC), which can be accessed through the AnaBench suite at http://anabench.bcm.umontreal.ca/anabench/. The source code is provided in the Additional File 2.…”
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    'Unite and conquer': enhanced prediction of protein subcellular localization by integrating multiple specialized tools
  16. 2896
    “…We anticipate that using simulated gene expression data sets will facilitate the direct comparison of computational strategies to predict gene expression from promoter sequence. The source code is available online and as additional material. …”
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    A cis-regulatory logic simulator
  17. 2897
    “…Contact: jstam@stamlab.org; noble@gs.washington.edu; Charles_Lawrence@brown.edu Supplementary information: Supplementary data are available at Bioinformatics online. Source code is available at http://noble.gs.washington.edu/proj/segment.…”
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    Automated mapping of large-scale chromatin structure in ENCODE
  18. 2898
    “…CONCLUSION: Fr-TM-align, a new algorithm that employs fragment alignment and assembly provides better structural alignments in comparison to TM-align. The source code and executables of Fr-TM-align are freely downloadable at: .…”
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    Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score
  19. 2899
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    A software pipeline for processing and identification of fungal ITS sequences
  20. 2900
    “…A web server implementation of our methods and freely available source code can be found at http://metastats.cbcb.umd.edu/.…”
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    Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples
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