“…Some of the components, such as the database, are modular and can be incorporated into other data platforms. The source code is freely available for download at https://github.com/wchangmitre/bioattribution. …”
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“…Database URL: ASAP’s and CleavePred source code, webtool and tutorials are available at: https://github.com/ddofer/asap; http://protonet.cs.huji.ac.il/cleavepred.…”
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“…CONCLUSIONS: Through evaluations based on multiple real PPI networks, we demonstrate that the proposed scheme leads to improved alignment results that are biologically more meaningful at reduced computational cost, outperforming the current state-of-the-art algorithms. The source code and datasets can be downloaded from http://www.ece.tamu.edu/~bjyoon/CUFID.…”
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“…In the Wnt-related network, the accuracy of our method is increased by [Formula: see text]. The source code and all datasets are available at https://figshare.com/s/580c11dce13e63cb9a53.…”
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“…SGFSC is an efficient tool that is freely available at http://nclab.hit.edu.cn/SGFSC. The source code of SGFSC can be downloaded from http://pan.baidu.com/s/1dFFmvpZ.…”
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“…Our algorithm provides a basic toolbox for reconstructing ancestral gene orders with duplications. The source code of MultiRes is available on https://github.com/ma-compbio/MultiRes. …”
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“…Second, a new miRNA predictor with significantly improved prediction accuracy is developed for the community for identifying novel miRNAs and the complete set of miRNAs. Source code is available at: https://github.com/xueLab/mirMeta…”
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“…It is implemented as R package TTCA (transcript time course analysis) and can be installed from the Comprehensive R Archive Network, CRAN. The source code is provided with the Additional file 1. …”
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“…By simultaneously considering both comparative genomic and transcriptomic data, it can provide better understanding of biological and medical questions. The iGC package’s source code and manual are freely available at https://www.bioconductor.org/packages/release/bioc/html/iGC.html. …”
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“…PyHLA is a free, open source software distributed under the GPLv2 license. The source code, tutorial, and examples are available at https://github.com/felixfan/PyHLA.…”
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“…The detected variants are reported as frequencies within a VCF file and as a graphical overview of the distribution of the different variant/allele/haplotype frequencies. The source code of VarCap is available at https://github.com/ma2o/VarCap. …”
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“…Reactome is an open data and open source project and all of its source code, including the one described here, is available in the AnalysisTools repository in the Reactome GitHub (https://github.com/reactome/).…”
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“…CONCLUSIONS: SBpipe allows users to automatically repeat the tasks of model simulation and parameter estimation, and extract robustness information from these repeat sequences in a solid and consistent manner, facilitating model development and analysis. The source code and documentation of this project are freely available at the web site: https://pdp10.github.io/sbpipe/. …”
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“…AVAILABILITY AND IMPLEMENTATION: The program source code for FSWM including a documentation, as well as the software that we used to generate artificial genome sequences are freely available at http://fswm.gobics.de/ SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
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“…Users can access fastheatmap directly from within the shinyheatmap web interface, and all source code has been made publicly available on Github: https://github.com/Bohdan-Khomtchouk/fastheatmap.…”
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“…ENIGMA-Viewer is an open-source tool, the source code and sample data are publicly accessible through the NITRC website (http://www.nitrc.org/projects/enigmaviewer_20). …”
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“…The software described here provides a graphical user interface for intuitive data exploration and region of interest (ROI) management that can be used interactively within Jupyter Notebook: a publicly available interactive Python platform that allows simple integration of our software with existing tools for automated ROI generation and post-processing, as well as custom analysis pipelines. SamuROI software, source code and installation instructions are publicly available on GitHub and documentation is available online. …”
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“…Furthermore, focusing on the case study, we show the higher biological relevance of the biomarkers selected by our approach. The RGIFE source code is available at: http://ico2s.org/software/rgife.html. …”
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