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  1. 3101
    por Will, Thorsten, Helms, Volkhard
    Publicado 2019
    “…A platform-independent Java binary, a user guide with example data and the source code are freely available at https://sourceforge.net/projects/complexchange/. …”
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    Differential analysis of combinatorial protein complexes with CompleXChange
  2. 3102
    por Heasman, Brett, Gillespie, Alex
    Publicado 2019
    “…We evaluate the strengths and limitations of the current method and provide recommendations for future research. The source code for Dyad3D is freely available (CC-BY-NC 4.0) so that the study is reproducible and open to future adaptation.…”
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    Participants Over-Estimate How Helpful They Are in a Two-Player Game Scenario Toward an Artificial Confederate That Discloses a Diagnosis of Autism
  3. 3103
    “…A tutorial with the source code and databases is available at https://gitlab.com/fcarazo.m/sfprediction. …”
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    Integration of CLIP experiments of RNA-binding proteins: a novel approach to predict context-dependent splicing factors from transcriptomic data
  4. 3104
    “…AVAILABILITY AND IMPLEMENTATION: The source code can be found at http://www.robots.ox.ac.uk/ davidc/code.php SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
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    Application of machine learning techniques to tuberculosis drug resistance analysis
  5. 3105
    “…AVAILABILITY AND IMPLEMENTATION: The source code and datasets of SED are freely available at https://zhanglab.ccmb.med.umich.edu/SED/. …”
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    Precise modelling and interpretation of bioactivities of ligands targeting G protein-coupled receptors
  6. 3106
    “…AVAILABILITY AND IMPLEMENTATION: Source code and link to all feature sets is available at https://github.com/Sage-Bionetworks/EvidenceAggregatedDriverRanking.…”
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    Identifying and ranking potential driver genes of Alzheimer’s disease using multiview evidence aggregation
  7. 3107
    “…AVAILABILITY AND IMPLEMENTATION: Flint is open source software, available under the MIT License (MIT). Source code is available at https://github.com/camilo-v/flint. …”
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    Large scale microbiome profiling in the cloud
  8. 3108
    “…AVAILABILITY AND IMPLEMENTATION: Source code is available at https://github.com/PfeiferLabTue/wenda. …”
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    Online Artículo Texto
    Weighted elastic net for unsupervised domain adaptation with application to age prediction from DNA methylation data
  9. 3109
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    Social support for collaboration and group awareness in life science research teams
  10. 3110
    por Li, Chuang, Li, Kenli, Li, Keqin, Lin, Feng
    Publicado 2019
    “…MCtandem is an open-source software tool implemented in C++. The source code and the parameter settings are available at https://github.com/LogicZY/MCtandem.…”
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    MCtandem: an efficient tool for large-scale peptide identification on many integrated core (MIC) architecture
  11. 3111
    “…AVAILABILITY AND IMPLEMENTATION: Our source code is available at https://github.com/LinearFold/LinearFold, and our webserver is at http://linearfold.org (sequence limit: 100 000nt). …”
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    LinearFold: linear-time approximate RNA folding by 5'-to-3' dynamic programming and beam search
  12. 3112
    “…AVAILABILITY AND IMPLEMENTATION: The source code of ProCell and the experimental data used in this work are available under the GPL 2.0 license on GITHUB at the following URL: https://github.com/aresio/ProCell. …”
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    Modeling cell proliferation in human acute myeloid leukemia xenografts
  13. 3113
    “…The performance at independent regulatory regions entirely excluded from the training set appears to be much lower than needed for practical applications, and even the performance estimation will become reliable only in the future with richer data from multiple reporters. The source code and data are available at https://bitbucket.org/autosomeru_cagi2018/cagi2018_regsat and https://genomeinterpretation.org/content/expression-variants.…”
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    What Do Neighbors Tell About You: The Local Context of Cis-Regulatory Modules Complicates Prediction of Regulatory Variants
  14. 3114
    “…AVAILABILITY AND IMPLEMENTATION: All the predicted mutation signatures with clustering results are freely available at http://www.f.waseda.jp/mhamada/MS/index.html. All the C++ source code and python scripts utilized in this study can be downloaded on the Internet (https://github.com/qkirikigaku/MS_LDA). …”
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    Discovering novel mutation signatures by latent Dirichlet allocation with variational Bayes inference
  15. 3115
    “…Strategies to increase decision model transparency by allowing direct external access to a model’s structure, source code, and data can take on many forms but are bounded between the status quo and free publicly available open-source models. …”
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    Achieving Appropriate Model Transparency: Challenges and Potential Solutions for Making Value-Based Decisions in the United States
  16. 3116
    “…PIPE-T can be easily installed from the Galaxy main tool shed or from Docker. Source code, step-by-step instructions, and example files are available on GitHub to assist new users to install, execute, and test PIPE-T. …”
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    PIPE-T: a new Galaxy tool for the analysis of RT-qPCR expression data
  17. 3117
    “…The software including the source code, a test VCF file and a documentation are available at: https://github.com/sansubs/vcf2pop.…”
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    VCF2PopTree: a client-side software to construct population phylogeny from genome-wide SNPs
  18. 3118
    “…The experimental results approve that the proposed approach in comparison to similar methods, has been achieved a more compact set of features along with high accuracy. The source code and testing datasets are available at https://github.com/jimy2020/SFLA_IWSSr-Feature-Selection.…”
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    An Efficient hybrid filter-wrapper metaheuristic-based gene selection method for high dimensional datasets
  19. 3119
    “…The neural network of Cox-PASNet can identify nonlinear and hierarchical associations of genomic and clinical data to cancer patient survival. The open-source code of Cox-PASNet in PyTorch implemented for training, evaluation, and model interpretation is available at: https://github.com/DataX-JieHao/Cox-PASNet.…”
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    Interpretable deep neural network for cancer survival analysis by integrating genomic and clinical data
  20. 3120
    “…Our approach is reproducible by scientists that aim to improve the performance results of different protein function prediction problems. Our source code and datasets are available at https://github.com/ngphubinh/adaptors.…”
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    Classification of adaptor proteins using recurrent neural networks and PSSM profiles
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