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  1. 3301
    “…Availability: WaVPeak is an open source program. The source code and two test spectra of WaVPeak are available at http://faculty.kaust.edu.sa/sites/xingao/Pages/Publications.aspx. …”
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    WaVPeak: picking NMR peaks through wavelet-based smoothing and volume-based filtering
  2. 3302
    “…A zip file containing the source code and jar file is freely available for download from http://www.bioinf.manchester.ac.uk/segminator/.…”
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    Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II
  3. 3303
    “…CONCLUSION: We developed a software program that takes into account the genetic and reproductive biology specific to the honey bee and that can be used to constitute a genomic dataset compatible with the simulation studies necessary to optimize breeding programs. The source code together with an instruction file is freely accessible at http://msproteomics.org/Research/Misc/honeybeepopulationsimulator.html…”
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    Simulating a base population in honey bee for molecular genetic studies
  4. 3304
    “…We will also provide the source code upon request. Contact: nico.scherf@tu-dresden.de…”
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    Imaging, quantification and visualization of spatio-temporal patterning in mESC colonies under different culture conditions
  5. 3305
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    Layout-aware text extraction from full-text PDF of scientific articles
  6. 3306
    “…The software is an easy-to-use protocol which is executed within the Acapella software system without requiring any additional libraries. The source code of the software is freely available at https://sourceforge.net/projects/bioimage/files/Callose.…”
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    CalloseMeasurer: a novel software solution to measure callose deposition and recognise spreading callose patterns
  7. 3307
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    Knowledge Driven Variable Selection (KDVS) – a new approach to enrichment analysis of gene signatures obtained from high–throughput data
  8. 3308
    “…These results suggest that MICAN is a highly effective tool for automatically detecting non-trivial structural relationships of proteins, such as circular permutations and segment-swapping, many of which have been identified manually by human experts so far. The source code of MICAN is freely download-able at http://www.tbp.cse.nagoya-u.ac.jp/MICAN.…”
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    MICAN : a protein structure alignment algorithm that can handle Multiple-chains, Inverse alignments, C(α) only models, Alternative alignments, and Non-sequential alignments
  9. 3309
    “…Availability: A prepared dashboard, including links to source code and a SPARQL endpoint, is available at http://bit.ly/TCGARoadmap. …”
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    A self-updating road map of The Cancer Genome Atlas
  10. 3310
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    BioPatRec: A modular research platform for the control of artificial limbs based on pattern recognition algorithms
  11. 3311
    por Jia, Caiyan, Carson, Matthew B, Yu, Jian
    Publicado 2013
    “…It is also capable of finding motifs in real applications. The source code for TFBSGroup can be obtained from http://bioinformatics.bioengr.uic.edu/TFBSGroup/.…”
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    A fast weak motif-finding algorithm based on community detection in graphs
  12. 3312
    “…The importance of our contribution is underlined by the fact that the provided functions may be seamlessly integrated into any short-read alignment pipeline. The open-source code of libgapmis is available at http://www.exelixis-lab.org/gapmis.…”
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    libgapmis: extending short-read alignments
  13. 3313
    “…HMCan predictions matched well with experimental data (qPCR validated regions) and included, for example, the previously detected H3K27me3 mark in the promoter of the DLEC1 gene, missed by other tools we tested. Availability: Source code and binaries can be downloaded at http://www.cbrc.kaust.edu.sa/hmcan/, implemented in C++. …”
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    HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data
  14. 3314
    “…Its design allows for use by research laboratories, hospitals or public health authorities. The full source code as well as ready to use packages is available at http://www.evocell.org/inTB. …”
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    inTB - a data integration platform for molecular and clinical epidemiological analysis of tuberculosis
  15. 3315
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    TrigNER: automatically optimized biomedical event trigger recognition on scientific documents
  16. 3316
    “…If feasible, anonymised data and underlying source code are intended to be made available under an open source license. …”
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    Diffusion of an evidence-based smoking cessation intervention through Facebook: a randomised controlled trial study protocol
  17. 3317
    por Chakraborty, Sandeep
    Publicado 2013
    “…The results of the best matches are sorted based on differing criteria to aid the detection of known and putative sequences. The source code for FRAGAL results on these sequences is available at https://github.com/sanchak/FragalCode, while the database can be accessed at www.sanchak.com/fragal.htm l.…”
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    A fragmented alignment method detects a putative phosphorylation site and a putative BRC repeat in the Drosophila melanogaster BRCA2 protein
  18. 3318
    “…An exclusive feature of MethylExtract, in comparison with existing software, is the possibility to assess the bisulfite failure in a statistical way. The source code, tutorial and artificial bisulfite datasets are available at http://bioinfo2.ugr.es/MethylExtract/ and http://sourceforge.net/projects/methylextract/, and also permanently accessible from 10.5281/zenodo.7144.…”
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    MethylExtract: High-Quality methylation maps and SNV calling from whole genome bisulfite sequencing data
  19. 3319
    “…Availability and implementation: Source code and executables are available at https://github.com/WaveCNV. …”
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    WaveCNV: allele-specific copy number alterations in primary tumors and xenograft models from next-generation sequencing
  20. 3320
    “…Among the serial algorithms, the two-vector and memoized versions are faster than the Frid-Gusfield algorithm by a factor of 3, and are faster than Nussinov by up to a factor of 20. The source-code for the algorithms is available at http://github.com/ijalabv/FourRussiansRNAFolding.…”
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    Faster algorithms for RNA-folding using the Four-Russians method
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