“…A C++ implementation of the method, distributed under LPGL license, is available, together with the source code, at http://www.paola-vera-licona.net/Software/EARevEng/REACT.html.…”
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“…Moreover, as a web resource, PINV simplifies sharing and publishing, activities which are vital in today’s research collaborative environments. The source code is freely available for download at https://github.com/4ndr01d3/biosual.…”
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“…The output sets can also be used with other analysis software such as ErmineJ that accept gene sets in the same format. Source code can be downloaded and installed locally from http://www.bioinformatics.org/go2msig/releases/ or used via the web interface at http://www.go2msig.org/cgi-bin/go2msig.cgi.…”
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“…We postulate that the ABs may facilitate novel target and drug discovery, leading to improved clinical treatment. Java source code, tutorial, example and related materials are available at “http://sourceforge.net/projects/miningabs/”.…”
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“…Availability and implementation: The analysis was implemented in R and Python, and source code can be found in Supplementary Data. Contact: b.chain@ucl.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online.…”
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“…AVAILABILITY: The squeezambler 2.0 C++ source code is available at http://sourceforge.net/projects/hyda/. …”
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“…Achieved results show that the proposed approach is very promising for predicting PPI, so it can be a useful supplementary tool for future proteomics studies. The source code and the datasets are freely available at http://csse.szu.edu.cn/staff/youzh/MCDPPI.zip for academic use.…”
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“…On real data MaxSSmap produces many alignments with high score and mapping quality that are not given by NextGenMap and BWA. The MaxSSmap source code in CUDA and OpenCL is freely available from http://www.cs.njit.edu/usman/MaxSSmap. …”
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“…Simple models can be easily generated by setting a few parameters, while more complex models can be implemented by overriding pieces of the original source code. eTOXlab benefits from the object-oriented capabilities of Python for providing high flexibility: any model implemented using eTOXlab inherits the features implemented in the parent model, like common tools and services or the automatic exposure of the models as prediction web services. …”
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“…The experimental data and source code featured in this paper is available http://AitchisonLab.com/BSCM. …”
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“…An instance of KaBOB with data about humans and seven major model organisms can be built using on the order of 500 million RDF triples. All source code for building KaBOB is available under an open-source license. …”
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“…Its practical computation time and its properties make ASD particularly relevant for applications requiring meaningful measures on distantly related protein fragments, such as similar fragments retrieval asking for high recalls as shown in the experiments, or for any application taking also advantage of triangle inequality, such as fragments clustering. ASD program and source code are freely available at: http://www.irisa.fr/dyliss/public/ASD/. …”
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“…Availability and implementation: Source code for the web service layer is available at https://github.com/OpenTreeOfLife/phylesystem-api. …”
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“…The DECIPHER R package and source code are freely available for download at DECIPHER.cee.wisc.edu and from the Bioconductor repository. …”
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“…To the best of our knowledge we provide the first distributed framework for microRNA target prediction based on Apache Hadoop and Spark. AVAILABILITY: All source code and data is publicly available at https://bitbucket.org/cellsandmachines/avishkar.…”
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“…It is freely available at http://www.scbdd.com/chemdes. The source code of the project is also available as a supplementary file. …”
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“…The algorithm is implemented using MATLAB and the source code is freely available at http://mapv.sourceforge.net.…”
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