“…The successful application of our method to independent groups of patients supports that the SdA method and the model learned from KIRC are effective on subtyping cancer patients and most likely can be used on other similar tasks. We supplied the source code and the models to assist similar studies at https://github.com/tjgu/cancer_subtyping.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…By developing the models in R, we were also able to use version control systems to manage changes to the source code, which is needed for iterative and collaborative model development. …”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…CONCLUSIONS: The web server for reconstructing chromatin 3D structures using multiple different objective functions and the related source code are publicly available at http://dna.cs.miami.edu/3DChrom/.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…CONCLUSIONS: The proposed label propagation framework combines pre-clinical drug structures with post-market safety reports, generates enhanced drug safety signals, and can potentially help to accurately detect ADRs ahead of time. AVAILABILITY: The source code for this paper is available at: https://github.com/ruoqi-liu/LP-SDA.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

Enlace del recurso
Enlace del recurso
Enlace del recurso

“…The tool's free open-source code makes it easy to implement among many substance-treatment services.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…Therefore, we conclude that the microbiome diversity at the species level, or gene level, is not necessarily associated with the diversity at the functional level, which again indicates the importance of KO-, EC-, and reaction-based features in metagenome analysis. The source code of proposed method is freely available from https://www.bioinformatics.org/mamed.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…RASflow has a broad range of potential users: it can be applied by researchers interested in any organism and since it requires no programming skills, it can be used by researchers with different backgrounds. The source code of RASflow is available on GitHub: https://github.com/zhxiaokang/RASflow. …”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…It is released under Artistic-2.0 License. The source code is freely available through Bioconductor (https://bioconductor.org/packages/fcScan) and GitHub (https://github.com/pkhoueiry/fcScan).…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…The PVAmpliconFinder workflow, along with its source code, is freely available on the GitHub platform: https://github.com/IARCbioinfo/PVAmpliconFinder.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…The project led to the development of a website that displayed sensor-based measurements in local neighborhoods and a GitHub-like repository for open source code and instructions. Preliminary results showed a reasonable comparison between sensor-based and EPA land-based federal reference monitor data for CO and NOx. …”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…Durations of care (length of hospital stay and duration of mechanical ventilation) are generated by fitting a two-parameter Weibull distribution to the hospital’s historical data from the initial phase of the pandemic (incorporating censoring due to ongoing care), for which we provide source code in the R programming language (R Foundation for Statistical Computing, Vienna, Austria). …”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…AVAILABILITY AND IMPLEMENTATION: DeepH3 source code and pre-trained model parameters are freely available at https://github.com/Graylab/deepH3-distances-orientations. …”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…BACKGROUND: The trend toward open science increases the pressure on authors to provide access to the source code and data they used to compute the results reported in their scientific papers. …”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…Meanwhile, the ncRNAs were enriched in the Detection of Stimulus, Sensory Perception, Immunological System, and Digestion categories. CORAZON source-code is freely available at https://gitlab.com/integrativebioinformatics/corazon and the web-server can be accessed at http://corazon.integrativebioinformatics.me.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…The application is freely accessible at http://shaman.pasteur.fr/, and may also work as a standalone application with a Docker container (aghozlane/shaman), conda and R. The source code is written in R and is available at https://github.com/aghozlane/shaman. …”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…CONCLUSIONS: smsMap is computationally efficient to align SMS reads, especially for the larger size of the reference genome (e.g., H. sapiens genome with over 3 billion base pairs). The source code of smsMap can be freely downloaded from https://github.com/NWPU-903PR/smsMap.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…CONCLUSIONS: Our work not only demonstrates that complex genomics analyses can be performed on lightweight computing systems, but also benefits High-Performance Computing (HPC). The associated source code for f5c along with GPU optimised ABEA is available at https://github.com/hasindu2008/f5c.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…The web server and source code URLs are provided in this article. RESULTS: Given a new sequence, CoV-Seq automatically predicts gene boundaries and identifies genetic variants, which are displayed in an interactive genome visualizer and are downloadable for further analysis. …”
Enlace del recurso
Enlace del recurso
Enlace del recurso

“…CONCLUSIONS: MetaLAFFA is a new end-to-end metagenomic functional annotation pipeline with distributed computing compatibility and flexible customization options. MetaLAFFA source code is available at https://github.com/borenstein-lab/MetaLAFFA and can be installed via Conda as described in the accompanying documentation.…”
Enlace del recurso
Enlace del recurso
Enlace del recurso