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  1. 3421
    “…The algorithm is implemented in Rust programming language and the source code is available at https://github.com/srirampc/adyar-rs.…”
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    An alignment-free heuristic for fast sequence comparisons with applications to phylogeny reconstruction
  2. 3422
    “…CONCLUSIONS: gCAnno is a robust and accurate cell type annotation tool for single cell RNA analysis. The source code of gCAnno is publicly available at https://github.com/xjtu-omics/gCAnno. …”
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    gCAnno: a graph-based single cell type annotation method
  3. 3423
    “…AVAILABILITY AND IMPLEMENTATION: As part of our contributions in the paper, we develop an easy-to-use Python package with detailed instructions, BioNEV, available at: https://github.com/xiangyue9607/BioNEV, including all source code and datasets, to facilitate studying various graph embedding methods on biomedical tasks. …”
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    Graph embedding on biomedical networks: methods, applications and evaluations
  4. 3424
    “…The model based design can identify an optimal dose after fewer patients relative to the rule based design. Open source code for the simulations is made available in order to determine adequate sample sizes for future adaptive snakebite trials. …”
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    A Bayesian phase 2 model based adaptive design to optimise antivenom dosing: Application to a dose-finding trial for a novel Russell’s viper antivenom in Myanmar
  5. 3425
    “…The overall framework, however, works already well and can be used in production, promising improvements in EBS. The source code and data are publicly available under open licenses.…”
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    EventEpi—A natural language processing framework for event-based surveillance
  6. 3426
    “…The link to the actual software release on GitHub including source code and executable is provided to support independent research and development in the field of intervention guidance. …”
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    3D-XGuide: open-source X-ray navigation guidance system
  7. 3427
    “…CONCLUSIONS: lncEvo is an all-in-one tool built with the Nextflow framework, utilizing state-of-the-art software and algorithms with customizable trade-offs between speed and sensitivity, ease of use and built-in reporting functionalities. The source code of the pipeline is freely available for academic and nonacademic use under the MIT license at https://gitlab.com/spirit678/lncrna_conservation_nf.…”
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    lncEvo: automated identification and conservation study of long noncoding RNAs
  8. 3428
    “…Lastly, we discuss the applicability of our approaches to other feature selection problems outside the realm of single-cell sequencing and the importance of being able to handle probabilistic training labels. Our source code and detailed documentation are available at https://github.com/TJU-CMC-Org/SingleCell-DREAM/.…”
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    Machine Learning Approaches Identify Genes Containing Spatial Information From Single-Cell Transcriptomics Data
  9. 3429
    “…The methods used in this work are implemented in the open-scource R scripts, with a source code freely available at https://github.com/FocusPaka/ZINBLDA.…”
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    Selecting Classification Methods for Small Samples of Next-Generation Sequencing Data
  10. 3430
    “…tabId=125#WALTER and the source code at https://github.com/mlyc93/WALTER.…”
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    WALTER: an easy way to online evaluate telomere lengths from terminal restriction fragment analysis
  11. 3431
    “…The model shows an impressive accuracy of 99% for all the datasets and its prediction capability becomes 100% accurate for the binary classification problem of detecting COVID-19 scans. Source code of this work can be found at GitHub-link.…”
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    GraphCovidNet: A graph neural network based model for detecting COVID-19 from CT scans and X-rays of chest
  12. 3432
    “…Moreover, Flame implements a mechanism allowing to extend its source code, adding unlimited model customization. Models generated with Flame can be easily exported, facilitating collaborative model development. …”
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    Flame: an open source framework for model development, hosting, and usage in production environments
  13. 3433
    “…This result is also at par with the many state-of-the-art methods mentioned in literature. The source code is available in the link https://github.com/sdrxc/Bi-level-Prediction-Model-for-Screening-COVID-19-from-Chest-X-ray-Images.…”
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    Bi-Level Prediction Model for Screening COVID-19 Patients Using Chest X-Ray Images
  14. 3434
    “…Resulting benchmarks enable an assessment of computational methods, workflows, and parameters specifically for a metagenomic habitat or ecosystem of a metagenomic study. AVAILABILITY: Source code, documentation and install instructions are freely available at GitHub (https://github.com/gerners/tamock). …”
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    Tamock: simulation of habitat-specific benchmark data in metagenomics
  15. 3435
    “…CONCLUSIONS: CpGmotifs is an open source software. Its source code is available on GitHub https://github.com/Greco-Lab/CpGmotifs and a ready-to-use docker image is provided on DockerHub at https://hub.docker.com/r/grecolab/cpgmotifs. …”
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    CpGmotifs: a tool to discover DNA motifs associated to CpG methylation events
  16. 3436
    “…We further provide our source code and an online platform to run predictions with our trained network.…”
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    Automated scoring of pre-REM sleep in mice with deep learning
  17. 3437
    “…It is freely available at http://vispr-online.weililab.org, while the source code is available at https://github.com/lemoncyb/VISPR-online. …”
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    VISPR-online: a web-based interactive tool to visualize CRISPR screening experiments
  18. 3438
    “…To promote research in this area, the Tongren dataset and source code will be made publicly available. The dataset and code will be made available at https://github.com/huawang123/VC-Net.…”
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    Automatic Artery/Vein Classification Using a Vessel-Constraint Network for Multicenter Fundus Images
  19. 3439
    “…AVAILABILITY AND IMPLEMENTATION: The open source code used to generate the results from MS images is available on GitHub: https://ibm.biz/mstransc. …”
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    On the feasibility of deep learning applications using raw mass spectrometry data
  20. 3440
    por Loesche, Frank, Reiser, Michael B.
    Publicado 2021
    “…In this paper, we thoroughly document the improved system; the accompanying repository incorporates CAD files, parts lists, source code, and detailed instructions. We detail a complete ~$300 system, including a cold-anesthesia tethering stage, that is ideal for hands-on teaching laboratories. …”
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    An Inexpensive, High-Precision, Modular Spherical Treadmill Setup Optimized for Drosophila Experiments
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