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  1. 3621
    “…CONCLUSIONS: Compared to base alignment and deep learning predecessors, DeepSelectNet can significantly improve the accuracy to enable real-time species classification using selective sequencing. The source code of DeepSelectNet is available at https://github.com/AnjanaSenanayake/DeepSelectNet.…”
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    Online Artículo Texto
    DeepSelectNet: deep neural network based selective sequencing for oxford nanopore sequencing
  2. 3622
    “…After predicting whether a sub-region contains an insertion through the previous steps, INSnet determines the precise site and length of the insertion. The source code is available from GitHub at https://github.com/eioyuou/INSnet. …”
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    Online Artículo Texto
    INSnet: a method for detecting insertions based on deep learning network
  3. 3623
    “…The string event generator interfaces with HERWIG and Pythia through BlackMax. The source code is publically available in the hepforge repository.…”
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    String Resonances at Hadron Colliders
  4. 3624
    Enlace del recurso
    Libro
    Practical algorithms for 3D computer graphics /
  5. 3625
    “…Further information about QI2, a public instance of the system, and its source code is available at https://medgift.github.io/quantimage-v2-info/. …”
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    Online Artículo Texto
    QuantImage v2: a comprehensive and integrated physician-centered cloud platform for radiomics and machine learning research
  6. 3626
    por Tommasini, Dario, Fogel, Brent L.
    Publicado 2023
    “…CONCLUSION: The multiWGCNA R package can be applied to expression data with two dimensions, which is especially useful for the study of disease-associated modules across time or space. The source code and functions are freely available at: https://github.com/fogellab/multiWGCNA. …”
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    Online Artículo Texto
    multiWGCNA: an R package for deep mining gene co-expression networks in multi-trait expression data
  7. 3627
    “…CONCLUSIONS: We developed scRNASequest, an end-to-end pipeline for single-cell RNA-seq data analysis, visualization, and publishing. The source code under MIT open-source license is provided at https://github.com/interactivereport/scRNASequest. …”
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    Online Artículo Texto
    scRNASequest: an ecosystem of scRNA-seq analysis, visualization, and publishing
  8. 3628
    “…Here, we provide Var∣Decrypt (trial version accessible here: https://vardecrypt.com/app/vardecrypt), a simple and intuitive Rshiny application created to fill this gap. Source code and detailed user tutorial are available at https://gitlab.com/mohammadsalma/vardecrypt. …”
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    Online Artículo Texto
    Var∣Decrypt: a novel and user-friendly tool to explore and prioritize variants in whole-exome sequencing data
  9. 3629
    “…Therefore, deepGBLUP is an efficient method to estimate an accurate genomic value. The source code and manual for deepGBLUP are available at https://github.com/gywns6287/deepGBLUP. …”
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    Online Artículo Texto
    deepGBLUP: joint deep learning networks and GBLUP framework for accurate genomic prediction of complex traits in Korean native cattle
  10. 3630
    “…CONCLUSIONS: We propose a memory-efficient representation of the pan-genome graph that supports subgraph visualization and lossless approximate pattern matching of reads against the graph using search schemes. The C++ source code of our software, called Nexus, is available at https://github.com/biointec/nexus under AGPL-3.0 license. …”
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    Online Artículo Texto
    Pan-genome de Bruijn graph using the bidirectional FM-index
  11. 3631
    “…As none of our configuration required changes to the module's source code, the EHR provider could have our optimized dashboards incorporated into the module's standard configuration. …”
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    Online Artículo Texto
    1264. Rewrite The SAARs; Experience Implementing Optimized SAAR/AU Dashboards Across a 10 Hospital Health-System
  12. 3632
    “…The proposed method can alleviate experimental burden of exhaustive test and provide a useful guide for the biologist in narrowing down the candidate gene pairs with SGI. The data and source code implementing the method are available from the website: http://home.ustc.edu.cn/~yzh33108/GeneticInterPred.htm…”
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    Texto
    A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network
  13. 3633
    “…Stable, supported builds of LabKey Server are freely available for download at http://www.labkey.org. Documentation and source code are available under the Apache License 2.0.…”
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    Texto
    LabKey Server: An open source platform for scientific data integration, analysis and collaboration
  14. 3634
    “…In this setting, snape has better power and False Discovery Rate (FDR) than the comparable packages samtools, PoPoolation, Varscan : for N = 50 chromosomes, snape has power ≈ 35%and FDR ≈ 2.5%. snape is available at http://code.google.com/p/snape-pooled/ (source code and precompiled binaries).…”
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    Online Artículo Texto
    SNP calling by sequencing pooled samples
  15. 3635
    “…The system has been designed in order to provide the researcher with a simple, innovative, and extensible solution to store and exploit analyzed data in a sustainable and reproducible manner thereby accelerating knowledge-driven research. Confero source code is freely available from http://sourceforge.net/projects/confero/.…”
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    Online Artículo Texto
    Confero: an integrated contrast data and gene set platform for computational analysis and biological interpretation of omics data
  16. 3636
    “…The videos, as well as the source code, are made publicly available. CONCLUSIONS: Animations based on density delay maps provide a new way of visualising dynamical properties of complex systems not apparent in time series graphs or standard Poincaré plot representations. …”
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    Online Artículo Texto
    Dynamical density delay maps: simple, new method for visualising the behaviour of complex systems
  17. 3637
    “…With increasing shared resources, this community will be able to advance CMTI in a very significant manner. Our source code is available at https://sourceforge.net/projects/cudamiranda/.…”
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    Online Artículo Texto
    GAMUT: GPU accelerated microRNA analysis to uncover target genes through CUDA-miRanda
  18. 3638
    “…All analyses were performed using QIIME’s uclust wrappers, though we provide details (aided by the open-source code in our GitHub repository) that will allow implementation of subsampled open-reference OTU picking independently of QIIME (e.g., in a compiled programming language, where runtimes should be further reduced). …”
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    Online Artículo Texto
    Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
  19. 3639
    “…ExpaRNA-P and ExpLoc-P are distributed as part of the LocARNA package. The source code is freely available at http://www.bioinf.uni-freiburg.de/Software/ExpaRNA-P. …”
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    Online Artículo Texto
    ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs
  20. 3640
    “…CCH is implemented in Python and is freely available (as source code) from http://sourceforge.net/projects/cchsnp/. …”
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    Online Artículo Texto
    Combinatorial Conflicting Homozygosity (CCH) analysis enables the rapid identification of shared genomic regions in the presence of multiple phenocopies
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