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Gráficos por computadora
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3621“…CONCLUSIONS: Compared to base alignment and deep learning predecessors, DeepSelectNet can significantly improve the accuracy to enable real-time species classification using selective sequencing. The source code of DeepSelectNet is available at https://github.com/AnjanaSenanayake/DeepSelectNet.…”
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3622“…After predicting whether a sub-region contains an insertion through the previous steps, INSnet determines the precise site and length of the insertion. The source code is available from GitHub at https://github.com/eioyuou/INSnet. …”
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3623por Anchordoqui, Luis A., Antoniadis, Ignatios, Dai, De-Chang, Feng, Wan-Zhe, Goldberg, Haim, Huang, Xing, Lust, Dieter, Stojkovic, Dejan, Taylor, Tomasz R.“…The string event generator interfaces with HERWIG and Pythia through BlackMax. The source code is publically available in the hepforge repository.…”
Publicado 2014
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3624
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3625por Abler, Daniel, Schaer, Roger, Oreiller, Valentin, Verma, Himanshu, Reichenbach, Julien, Aidonopoulos, Orfeas, Evéquoz, Florian, Jreige, Mario, Prior, John O., Depeursinge, Adrien“…Further information about QI2, a public instance of the system, and its source code is available at https://medgift.github.io/quantimage-v2-info/. …”
Publicado 2023
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3626“…CONCLUSION: The multiWGCNA R package can be applied to expression data with two dimensions, which is especially useful for the study of disease-associated modules across time or space. The source code and functions are freely available at: https://github.com/fogellab/multiWGCNA. …”
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3627por Li, Kejie, Sun, Yu H., Ouyang, Zhengyu, Negi, Soumya, Gao, Zhen, Zhu, Jing, Wang, Wanli, Chen, Yirui, Piya, Sarbottam, Hu, Wenxing, Zavodszky, Maria I., Yalamanchili, Hima, Cao, Shaolong, Gehrke, Andrew, Sheehan, Mark, Huh, Dann, Casey, Fergal, Zhang, Xinmin, Zhang, Baohong“…CONCLUSIONS: We developed scRNASequest, an end-to-end pipeline for single-cell RNA-seq data analysis, visualization, and publishing. The source code under MIT open-source license is provided at https://github.com/interactivereport/scRNASequest. …”
Publicado 2023
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3628“…Here, we provide Var∣Decrypt (trial version accessible here: https://vardecrypt.com/app/vardecrypt), a simple and intuitive Rshiny application created to fill this gap. Source code and detailed user tutorial are available at https://gitlab.com/mohammadsalma/vardecrypt. …”
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3629“…Therefore, deepGBLUP is an efficient method to estimate an accurate genomic value. The source code and manual for deepGBLUP are available at https://github.com/gywns6287/deepGBLUP. …”
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3630“…CONCLUSIONS: We propose a memory-efficient representation of the pan-genome graph that supports subgraph visualization and lossless approximate pattern matching of reads against the graph using search schemes. The C++ source code of our software, called Nexus, is available at https://github.com/biointec/nexus under AGPL-3.0 license. …”
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3631“…As none of our configuration required changes to the module's source code, the EHR provider could have our optimized dashboards incorporated into the module's standard configuration. …”
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3632“…The proposed method can alleviate experimental burden of exhaustive test and provide a useful guide for the biologist in narrowing down the candidate gene pairs with SGI. The data and source code implementing the method are available from the website: http://home.ustc.edu.cn/~yzh33108/GeneticInterPred.htm…”
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3633por Nelson, Elizabeth K, Piehler, Britt, Eckels, Josh, Rauch, Adam, Bellew, Matthew, Hussey, Peter, Ramsay, Sarah, Nathe, Cory, Lum, Karl, Krouse, Kevin, Stearns, David, Connolly, Brian, Skillman, Tom, Igra, Mark“…Stable, supported builds of LabKey Server are freely available for download at http://www.labkey.org. Documentation and source code are available under the Apache License 2.0.…”
Publicado 2011
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3634por Raineri, Emanuele, Ferretti, Luca, Esteve-Codina, Anna, Nevado, Bruno, Heath, Simon, Pérez-Enciso, Miguel“…In this setting, snape has better power and False Discovery Rate (FDR) than the comparable packages samtools, PoPoolation, Varscan : for N = 50 chromosomes, snape has power ≈ 35%and FDR ≈ 2.5%. snape is available at http://code.google.com/p/snape-pooled/ (source code and precompiled binaries).…”
Publicado 2012
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3635por Hermida, Leandro, Poussin, Carine, Stadler, Michael B, Gubian, Sylvain, Sewer, Alain, Gaidatzis, Dimos, Hotz, Hans-Rudolf, Martin, Florian, Belcastro, Vincenzo, Cano, Stéphane, Peitsch, Manuel C, Hoeng, Julia“…The system has been designed in order to provide the researcher with a simple, innovative, and extensible solution to store and exploit analyzed data in a sustainable and reproducible manner thereby accelerating knowledge-driven research. Confero source code is freely available from http://sourceforge.net/projects/confero/.…”
Publicado 2013
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3636“…The videos, as well as the source code, are made publicly available. CONCLUSIONS: Animations based on density delay maps provide a new way of visualising dynamical properties of complex systems not apparent in time series graphs or standard Poincaré plot representations. …”
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3637por Wang, Shuang, Kim, Jihoon, Jiang, Xiaoqian, Brunner, Stefan F, Ohno-Machado, Lucila“…With increasing shared resources, this community will be able to advance CMTI in a very significant manner. Our source code is available at https://sourceforge.net/projects/cudamiranda/.…”
Publicado 2014
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3638por Rideout, Jai Ram, He, Yan, Navas-Molina, Jose A., Walters, William A., Ursell, Luke K., Gibbons, Sean M., Chase, John, McDonald, Daniel, Gonzalez, Antonio, Robbins-Pianka, Adam, Clemente, Jose C., Gilbert, Jack A., Huse, Susan M., Zhou, Hong-Wei, Knight, Rob, Caporaso, J. Gregory“…All analyses were performed using QIIME’s uclust wrappers, though we provide details (aided by the open-source code in our GitHub repository) that will allow implementation of subsampled open-reference OTU picking independently of QIIME (e.g., in a compiled programming language, where runtimes should be further reduced). …”
Publicado 2014
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3639por Otto, Christina, Möhl, Mathias, Heyne, Steffen, Amit, Mika, Landau, Gad M, Backofen, Rolf, Will, Sebastian“…ExpaRNA-P and ExpLoc-P are distributed as part of the LocARNA package. The source code is freely available at http://www.bioinf.uni-freiburg.de/Software/ExpaRNA-P. …”
Publicado 2014
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3640por Levine, Adam P, Connor, Thomas M F, Oygar, D Deren, Neild, Guy H, Segal, Anthony W, Maxwell, Patrick H, Gale, Daniel P“…CCH is implemented in Python and is freely available (as source code) from http://sourceforge.net/projects/cchsnp/. …”
Publicado 2015
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