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Gráficos por computadora
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3681por Hita, Andrea, Brocart, Gilles, Fernandez, Ana, Rehmsmeier, Marc, Alemany, Anna, Schvartzman, Sol“…Its approach is suitable for the simultaneous estimation of protein-coding, long non-coding and small non-coding transcript concentration, in both precursor and processed forms. Both source code and compiled software are available at https://github.com/hitaandrea/MGcount. …”
Publicado 2022
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3682por Kuang, Xingyan, Wang, Fan, Hernandez, Kyle M., Zhang, Zhenyu, Grossman, Robert L.“…To facilitate ML model development for AMR prediction, we packaged every step into an automated pipeline and shared the source code at https://github.com/KuangXY3/MTB-AMR-classification-CNN.…”
Publicado 2022
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3683“…The main contribution of CSMDDI contains the development of a generalized framework to predict the single-type and multi-type of DDIs in the cold start scenario, as well as the implementations of several embedding models for both single-type and multi-type of DDIs. The dataset and source code can be accessed at https://github.com/itsosy/csmddi. …”
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3684por Dubos, Tristan, Poulet, Axel, Thomson, Geoffrey, Péry, Emilie, Chausse, Frédéric, Tatout, Christophe, Desset, Sophie, van Wolfswinkel, Josien C., Jacob, Yannick“…NODeJ can be downloaded from https://gitlab.com/axpoulet/image2danalysis/-/releases with source code, documentation and further information avaliable at https://gitlab.com/axpoulet/image2danalysis. …”
Publicado 2022
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3685por Kutschera, Verena E., Kierczak, Marcin, van der Valk, Tom, von Seth, Johanna, Dussex, Nicolas, Lord, Edana, Dehasque, Marianne, Stanton, David W. G., Khoonsari, Payam Emami, Nystedt, Björn, Dalén, Love, Díez-del-Molino, David“…GenErode is written in Snakemake and Python3 and uses Conda and Singularity containers to achieve reproducibility on high-performance compute clusters. The source code is freely available on GitHub (https://github.com/NBISweden/GenErode). …”
Publicado 2022
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3686“…SAPFIR is freely available at https://bioinfo-scottgroup.med.usherbrooke.ca/sapfir/, a website implemented in Python, with all major browsers supported. The source code is available at https://github.com/DelongZHOU/SAPFIR. …”
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3687“…Binning also helps to reduce the resources required for assembly. Source code for LRBinner is freely available at https://github.com/anuradhawick/LRBinner. …”
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3688por Padovani, Francesco, Mairhörmann, Benedikt, Falter-Braun, Pascal, Lengefeld, Jette, Schmoller, Kurt M.“…Finally, the open-source and modularized nature of Cell-ACDC will enable simple and fast integration of new deep learning-based and traditional methods for cell segmentation, tracking, and downstream image analysis. Source code: https://github.com/SchmollerLab/Cell_ACDC SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12915-022-01372-6.…”
Publicado 2022
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3689“…CONCLUSIONS: PDGPCS can more accurately identify the personalized driver genes and takes a step further toward personalized medicine and treatment. The source code of PDGPCS can be freely downloaded from https://github.com/NWPU-903PR/PDGPCS. …”
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3690por Henry, C. Nicholas, Piper, Kathryn, Wilson, Amanda E., Miraszek, John L., Probst, Claire S., Rong, Yuying, Liberles, David A.“…The software tool has been made available on the Python package index and the source code can be found on GitHub here: https://github.com/cnickh/wgdtree. …”
Publicado 2022
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3691por Schürz, Melanie, Danmayr, Joachim, Jaritsch, Maria, Klinglmayr, Eva, Benirschke, Heloisa Melo, Matea, Cristian‐Tudor, Zimmerebner, Patrick, Rauter, Jakob, Wolf, Martin, Gomes, Fausto Gueths, Kratochvil, Zdenek, Heger, Zbynek, Miller, Andrew, Heuser, Thomas, Stanojlovic, Vesna, Kiefer, Jana, Plank, Tanja, Johnson, Litty, Himly, Martin, Blöchl, Constantin, Huber, Christian G., Hintersteiner, Martin, Meisner‐Kober, Nicole“…Since we further provide the plugin as open‐source code, we expect EVAnalyzer to not only be a resource of immediate impact, but an open innovation platform for the EV and nanoparticle research communities.…”
Publicado 2022
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3692por Wang, Yonghui, Zhao, Zicheng, Miao, Xinyao, Wang, Yinan, Qian, Xiaobo, Chen, Lingxi, Wang, Changfa, Li, Shuaicheng“…CONCLUSION: Our eSMC effectively infers the time of the most recent admixture event in history from a single individual’s genomics data. The source code of eSMC is hosted at https://github.com/zachary-zzc/eSMC.…”
Publicado 2022
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3693por Zulfiqar, Mahnoor, Gadelha, Luiz, Steinbeck, Christoph, Sorokina, Maria, Peters, Kristian“…MAW is following the FAIR (Findable, Accessible, Interoperable, Reusable) principles and has been made available as the docker images, maw-r and maw-py. The source code and documentation are available on GitHub (https://github.com/zmahnoor14/MAW). …”
Publicado 2023
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3694por Asif, Muhammad, Martiniano, Hugo F. M. C., Lamurias, Andre, Kausar, Samina, Couto, Francisco M.“…In summary, functional similarities, dimension reduction and clustering methods, coupled with interactive visualization and control over analysis allows biologists to explore and analyze their datasets without requiring expert knowledge on these methods. The source code of proposed application is available at https://github.com/Muh-Asif/DGH-GO SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12859-023-05290-4.…”
Publicado 2023
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3695“…These classifications were validated against self-reported data from the Health in Central Denmark survey – overall and stratified by age at onset of diabetes. The source-code of both classifiers was made available in the open-source R package osdc. …”
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3696por Louw, Candice“…Despite the open nature of such OSS solutions’ source code, software solutions (both OSS and non-OSS) are only as transparent as the live or production environment where their processed data is hosted or stored. …”
Publicado 2023
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3697por Luo, Junwei, Feng, Yading, Wu, Xuyang, Li, Ruimin, Shi, Jiawei, Chang, Wenjing, Wang, Junfeng“…ForestSubtype outperforms the other two methods in terms of the distribution of clusters, internal and external metric results. The open-source code is available at https://github.com/lffyd/ForestSubtype. …”
Publicado 2023
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3698por Zhou, Chen, Dai, Shuaijian, Lai, Shengzhi, Lin, Yuanqiao, Zhang, Xuechen, Li, Ning, Yu, Weichuan“…CONCLUSIONS: ECL 3.0 source code is available at https://github.com/yuweichuan/ECL-PF.git. …”
Publicado 2023
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3699por Simkó, Attila, Ruiter, Simone, Löfstedt, Tommy, Garpebring, Anders, Nyholm, Tufve, Bylund, Mikael, Jonsson, Joakim“…Our proposed model and source code were made publicly available.…”
Publicado 2023
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3700“…Measures of correspondence of shared semantic domain of 0 (perfect match), 1 (fully inclusive match), 2 (partial match), 4 (transformation required) or 4* (not present in ORCHESTRA) as compared to the target code system, ORCHESTRA study variables, were assigned to each of the elements in the ISARIC FUP case report form (CRF) which was considered the source code system. Of the ISARIC FUP CRF’s variables, around 34% were found to show an exact match with corresponding variables in ORCHESTRA studies and about 33% showed a non-inclusive overlap. …”
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